PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g299010.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 993aa    MW: 112790 Da    PI: 8.8344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g299010.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-10386430246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++WT+ Ed+ l+++v++ G ++W  Ia  +g++Rt+ qc  r+q 
  Pd.00g299010.m01 386 KSWTAKEDKNLLHLVQEKGIDNWFNIAVLLGTNRTPFQCLARYQR 430
                       58*****************************************96 PP
2Myb_DNA-binding431e-13439482246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         WT++Ed +l  av+ lG g+W ++a+ +  gRt+ qc +rw+k
  Pd.00g299010.m01 439 REWTKDEDARLRLAVEALGEGDWQSVASALE-GRTGSQCSNRWNK 482
                       68*****************************.************8 PP
3Myb_DNA-binding44.82.9e-14492535246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       grWT+eEd++l+ a  ++G+++W++ a+ ++ gRt  qc++r+ +
  Pd.00g299010.m01 492 GRWTPEEDKRLKVAQMLFGPKNWNKTAQFVP-GRTQAQCRDRYVN 535
                       8******************************.***********77 PP
4Myb_DNA-binding452.6e-14544587247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       g WT+eEd +l +a++++G   W+++a++++ +Rt+++c  rw  +
  Pd.00g299010.m01 544 GEWTEEEDSRLREAIAEYGYC-WSKVAACVP-RRTDNMCWRRWKVL 587
                       68*****************99.*********.***********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    
MEAIRRACML TGTNPDDLNP NNNNQGGGDL RHSSGSESES DSDEVDDDIE LLRKIRSRFS  60
NISDFCEPLS LKPLSSLPPA VSDDEEDDYQ TLLSVQKRFA AYQNDTCKPV KETCNEIAHE  120
SSQGTEDACM AIHPLSDNAE GQPSASIELQ QSESCRPSTL PAKYSTFPKS AQVFMDAIKK  180
NRSSQKFLRS KLVQIEAKIE ENRKLKERVK ILKDFQVSCK KRTGEALSQK KDPRVQLILV  240
NRPRKFRDLK AHDKKISAMF YAPEENSHVA NYRMTLTKFL HSLDRKKWSK AEKKALEKGI  300
RQQFQEMVLQ FSVHESSCSE RPYGDSNHID DILASILYLE ITPEKIREFL PKVNWEQLAS  360
MYIVGRSGGE CEARWLNWED PLIKHKSWTA KEDKNLLHLV QEKGIDNWFN IAVLLGTNRT  420
PFQCLARYQR SLNASILKRE WTKDEDARLR LAVEALGEGD WQSVASALEG RTGSQCSNRW  480
NKSLHPTRKR EGRWTPEEDK RLKVAQMLFG PKNWNKTAQF VPGRTQAQCR DRYVNSLEPS  540
LKWGEWTEEE DSRLREAIAE YGYCWSKVAA CVPRRTDNMC WRRWKVLFPD EVSLLKEEKR  600
IRKAALMCNF VDRETERPAL GPNDFRPPIV TSTKTLTYSR KQKGKLSKVS KKIRSRRQRN  660
NSQSCSKVSE IDNFDKVETC EGHDASNTKN KVRKQRRIRH KGTEPTGECQ VVVTLPCEQD  720
THKEPREMSC SDQIVGTSDG DDTTLACFLR NKSKKRKLGP VPSINGKKKR KLVASDSAVQ  780
ECPANSIQKG CEVHPEMDEV CDGNQIVSFR KDDEFVVHCD DRISDRMPPC SVQSSHLNGN  840
IMASDNEPDG LKLVSGWKAG LKEPVRKVVG IDPESDGDTD DFVLASLRKK KLKKRHPQTA  900
KSSPHSCPPS GVTTRSEPLP KRVDQSNDRS QVPFVAVGNE PGAVDIGKQH GVDHRETVKE  960
IVNIGAEGDH EAGDTTLACF LRNKSNNRQR QSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1749757LRNKSKKRK
2754771KKRKLGPVPSINGKKKRK
3755772KKRKLGPVPSINGKKKRK
4767772KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0MYB family protein