PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g297080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 559aa MW: 61217.1 Da PI: 7.3091

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g297080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.5	1.4e-41	177	252	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q Pd.00g297080.m01 177 CQVYGCDKDLSSSKDYHKRHKVCEAHSKTAKVIVNGREQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 252 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MESWSRISVG KEFVSDETIS HTDSFSRSRN TLMGWELKIP CTFGSNVLVS GQQAIESQGF 60 GELGFPEMMG KHFSNNPIRD VLSGKVYGER STNTISMATP NLFSAEDVSS SKLSSSIVDS 120 NSRDSSLIDL KLGRLADNRD FHDSKFSKGH PILSSSESST PPKRMRVSGS YSQTAYCQVY 180 GCDKDLSSSK DYHKRHKVCE AHSKTAKVIV NGREQRFCQQ CSRFHLLAEF DDGKRSCRKR 240 LAGHNERRRK PQVGIHSGRA GRLLQSYNGS RFQDNMLTTA SFICQEILPS GILDAENYGT 300 NDWCRHIKVE DATHYRPLSG VPVTNGHLPL KPVFPSYDIG KRYPPFHDNG TNPLTGNIII 360 ENGSQYSHDM RGLNSGSHSM FHETTTLGSE DFNVFNTAST VHGLSGISDS GCALSLLSSQ 420 SQKSSSHLSG IPMARPLVMP VSHTNYRLVQ SSENLIGGCS HASSSGVSNK LPSSGMNSGA 480 GTHLGPILQS NGSDTDDFGI SDGIFQGSDF VNAKDCLSCE DGTTIDLLQL SSQLQRVEDQ 540 RQSMEVKQES DAFCCLRIT

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MESWSRISVG KEFVSDETIS HTDSFSRSRN TLMGWELKIP CTFGSNVLVS GQQAIESQGF  60
GELGFPEMMG KHFSNNPIRD VLSGKVYGER STNTISMATP NLFSAEDVSS SKLSSSIVDS  120
NSRDSSLIDL KLGRLADNRD FHDSKFSKGH PILSSSESST PPKRMRVSGS YSQTAYCQVY  180
GCDKDLSSSK DYHKRHKVCE AHSKTAKVIV NGREQRFCQQ CSRFHLLAEF DDGKRSCRKR  240
LAGHNERRRK PQVGIHSGRA GRLLQSYNGS RFQDNMLTTA SFICQEILPS GILDAENYGT  300
NDWCRHIKVE DATHYRPLSG VPVTNGHLPL KPVFPSYDIG KRYPPFHDNG TNPLTGNIII  360
ENGSQYSHDM RGLNSGSHSM FHETTTLGSE DFNVFNTAST VHGLSGISDS GCALSLLSSQ  420
SQKSSSHLSG IPMARPLVMP VSHTNYRLVQ SSENLIGGCS HASSSGVSNK LPSSGMNSGA  480
GTHLGPILQS NGSDTDDFGI SDGIFQGSDF VNAKDCLSCE DGTTIDLLQL SSQLQRVEDQ  540
RQSMEVKQES DAFCCLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-49	SBP family protein