PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g286880.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 284aa MW: 32426 Da PI: 9.5573

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g286880.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.9	4.5e-15	204	228	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+yG++C+FaHg Pd.00g286880.m01 204 KTELCNKWEETGTCPYGENCQFAHG 228 8***********************9 PP
2	zf-CCCH	25.5	2.3e-08	241	266	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr a++G C+yG rC+F H+ Pd.00g286880.m01 241 YKTQLCRMVAAGGKCPYGHRCHFRHS 266 9**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MRLFHFQLSV SFVSIAFGII IILLYGDQRR LSNLTRFVDA RFRLRFCLNR LTQAQLILES 60 QELRDHYDLC SAHLRDLADE LDSLRRENSH LRSANADLVK LLSSQAAFQS FLLSSSSPSA 120 YQSPPTTSFL DDFRRLGFGS LGPRDGVVSD EASDISPTSV IERNRFDVVD RVALPKSISV 180 RSSTRPRVQV QQSQVKVFNQ GMVKTELCNK WEETGTCPYG ENCQFAHGVR ELRPVMRHPR 240 YKTQLCRMVA AGGKCPYGHR CHFRHSLTER ERLQLAVAAQ TRFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	5e-56	C3H family protein