PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g282660.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 800aa MW: 87013 Da PI: 6.6218

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g282660.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	89.8	2.6e-28	457	522	38	101
NF-YC 38 misaeaPvl..lskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 m+ + P + l++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivpr++l Pd.00g282660.m01 457 MVGSPNPGIkkLTRACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDL 522 5666666554489**************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MAAVTLLALG NGAPDVFASV AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFSLN 60 PAPFVRDVLF YLTAALFLFY VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGLGAGGKKS 120 RVEEGVVGDS EIQRGLVAPD FEIGQVSENS EDGKPSFGFR RTLVMISKAW ELPVSVLLKL 180 TIPQAAPSEW SRFYTSANIG LCPLALLYAC NSFMPFNHPV VFLLSDTHLP LWFVVLLASS 240 PLALLHYIVE KDPPKNEQMP VLLIAFVMSV FWISTTAGEL LNCLAALGSL LELPPALLGL 300 TVLAWGNSVG DLVADVALAK AGHPAMAMAG CFAGPMFNML VGLGTALVIQ TYNVYPEVYE 360 LQFHVGIIIA FVFLLLSLMG SLLVITWCRF RNRTLPRSFC SSFLGTQLIL RSRAPPVREK 420 GQVAMDPQGH NQPQSMGMVG SGAQLTYGTN PYQHNQMVGS PNPGIKKLTR ACEMFILELT 480 LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTVSVGGP 540 ADALPYCYMP PQHAPQVGAP GMIMVHLHLI NKQSKRAKAQ GTPRCDAVSY ISGRPQMAAS 600 GPTRFAGTSK TNEPDHFDPQ QPILDVKPLN SMPYIGPPTM HPSTTTDSDA QEKLKPTVII 660 LPPDSTREQW NKALETNKSG IVLTGAAARG QVGPIIGLVD IGENEDSYLF RVNLPGVLRD 720 ENFECSVDID GEVFIKGVTT TGEKTVCKNS QVFKMQTQNL CPPGHFSISF QLPGPVECQK 780 VTLSFETDGI LEAIVQKKLP

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MAAVTLLALG NGAPDVFASV AAVRTGQYRT GFGAILSAGT FVSAFVVGFV AIYAAPFSLN  60
PAPFVRDVLF YLTAALFLFY VYLSAEIYLW QAVGFVGFYL FFVGLVFWMD LGLGAGGKKS  120
RVEEGVVGDS EIQRGLVAPD FEIGQVSENS EDGKPSFGFR RTLVMISKAW ELPVSVLLKL  180
TIPQAAPSEW SRFYTSANIG LCPLALLYAC NSFMPFNHPV VFLLSDTHLP LWFVVLLASS  240
PLALLHYIVE KDPPKNEQMP VLLIAFVMSV FWISTTAGEL LNCLAALGSL LELPPALLGL  300
TVLAWGNSVG DLVADVALAK AGHPAMAMAG CFAGPMFNML VGLGTALVIQ TYNVYPEVYE  360
LQFHVGIIIA FVFLLLSLMG SLLVITWCRF RNRTLPRSFC SSFLGTQLIL RSRAPPVREK  420
GQVAMDPQGH NQPQSMGMVG SGAQLTYGTN PYQHNQMVGS PNPGIKKLTR ACEMFILELT  480
LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTVSVGGP  540
ADALPYCYMP PQHAPQVGAP GMIMVHLHLI NKQSKRAKAQ GTPRCDAVSY ISGRPQMAAS  600
GPTRFAGTSK TNEPDHFDPQ QPILDVKPLN SMPYIGPPTM HPSTTTDSDA QEKLKPTVII  660
LPPDSTREQW NKALETNKSG IVLTGAAARG QVGPIIGLVD IGENEDSYLF RVNLPGVLRD  720
ENFECSVDID GEVFIKGVTT TGEKTVCKNS QVFKMQTQNL CPPGHFSISF QLPGPVECQK  780
VTLSFETDGI LEAIVQKKLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	498	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	6e-43	NF-YC family protein