PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g280000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 511aa    MW: 58629.2 Da    PI: 9.7244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g280000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.2e-07458477525
                       --SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        C+++a+ G C yG++CkF+H
  Pd.00g280000.m01 458 MCKYYAQ-GRCYYGNNCKFSH 477
                       6******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    
MATSEQSKYH QYEEKDGDFL ETGESDPEYD SDDSMKDPSY SSTLEETHAT FSKLSIKRNS  60
KTRIAKDIDL GSEADLDGQE VVLPGLDQKD EKSFEMVQKI IEARQIEKLK VEQCKLYLRK  120
NGLRLTGNKD TLIQRIKEHL EILNGGGEKK YPASSFVLNC KGDACTSDVV MFEQNVYEIF  180
DIASRSGRGP PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN  240
LYRLKTLRQR WEDEGERQKV LMEKHTRGSL ARTAKEARVQ EKDMRKMLKR NRVSRKEEPK  300
KNQSQFNSTS VLKTSVQPQQ SGSLVNSANL HQLVGISVHS GNTKVCAQQL GLFTDLLRDP  360
SLKPATQIHQ SGFVVYSQNP ATQPPVPKSG FFVDSRKVPI QPQLTKNTTM QDRYFNQASQ  420
KLNESRNSNN TERVYNKRQP LTSVNHFLPT SPQGQKQMCK YYAQGRCYYG NNCKFSHAMR  480
GNYNERREER WPHEQRNLCQ QQIFLWNERE L