PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g270490.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 547aa MW: 60668.5 Da PI: 7.124

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g270490.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.7	5.6e-22	67	114	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsr Pd.00g270490.m01 67 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSR 114 6**********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MLHLGSSRTE QGKKEEASGA VKNTAEDEDD ESLQLNLAGG LTSVEEPVPR PNKRVRSGSP 60 GNGSYPMCQV DNCKEDLSNA KDYHRRHKVC EIHSKATKAP VAKQMQRFCQ QCSRGSNRGA 120 DASSIQSFPH QAGYTSSGSD HSPSSLNSDP QDRTGRILFK LFDKDPSHLP GSLRTQIYNW 180 LSNSPSEMES YIRPGCVVLS VYVSMSSAAW EQFEGNLVQR VSSLVQSSDS DFWRSGRFLV 240 HTGRQLASHK DGKIRICKAW RSCSSPELIS VSPLAVVGGQ ETSLVLRGRN LTNLGTRIHC 300 TYLGGYTSKE ATGSTYHGTM YDEINLGSFQ VHDASPGVLG RCFIEVENGF KGNSFPVIIA 360 DASICRELRL LESVFDAEAK ACDVISEDEN RDYGRPTSRE EVLHFLNELG WLFQRKRICS 420 MLQEPRYSLS RLKFLLTFTV EKDCCVLVKT LLDILFERNL DGDGLLGESL GMLSDIQLLN 480 RAVKRRCRKM VDLLVNYSVI SSDKRYIFPP NLAGPGGMTP LHLAACMSNT DDMIDALTND 540 PQEVIKN

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MLHLGSSRTE QGKKEEASGA VKNTAEDEDD ESLQLNLAGG LTSVEEPVPR PNKRVRSGSP  60
GNGSYPMCQV DNCKEDLSNA KDYHRRHKVC EIHSKATKAP VAKQMQRFCQ QCSRGSNRGA  120
DASSIQSFPH QAGYTSSGSD HSPSSLNSDP QDRTGRILFK LFDKDPSHLP GSLRTQIYNW  180
LSNSPSEMES YIRPGCVVLS VYVSMSSAAW EQFEGNLVQR VSSLVQSSDS DFWRSGRFLV  240
HTGRQLASHK DGKIRICKAW RSCSSPELIS VSPLAVVGGQ ETSLVLRGRN LTNLGTRIHC  300
TYLGGYTSKE ATGSTYHGTM YDEINLGSFQ VHDASPGVLG RCFIEVENGF KGNSFPVIIA  360
DASICRELRL LESVFDAEAK ACDVISEDEN RDYGRPTSRE EVLHFLNELG WLFQRKRICS  420
MLQEPRYSLS RLKFLLTFTV EKDCCVLVKT LLDILFERNL DGDGLLGESL GMLSDIQLLN  480
RAVKRRCRKM VDLLVNYSVI SSDKRYIFPP NLAGPGGMTP LHLAACMSNT DDMIDALTND  540
PQEVIKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	481	486	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-175	SBP family protein