PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g258440.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 26054.4 Da    PI: 8.9574
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g258440.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.5e-131058350
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeys 50
                      ie++  r+  + kR+  +lKK +EL +LCd+ + vii++++ ++l  ++
  Pd.00g258440.m01 10 IEDDKSRKACYRKRKICLLKKLNELTILCDVSAFVIIYGPEkDELVVWP 58
                      99*************************************7515677666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MKNKLKTTWI EDDKSRKACY RKRKICLLKK LNELTILCDV SAFVIIYGPE KDELVVWPSR  60
PVVQELLEKF LRLPLADQCR RMLDQKAYLK ERAAKIEEQI RKAKKKNHEM KMKDILHKIQ  120
EGKPLSEFET RDLIDFILFL EEKMLEIQER VELLEQHVPQ GAGEKEKGKE IENNAANIVR  180
NENITGGICS SINMGENEKS GFRLMGVDIK VGHLLHEGNN GGTQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.15e-26M-type_MADS family protein