PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g256060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 977aa MW: 107426 Da PI: 4.9166

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g256060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.6e-08	607	627	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Pd.00g256060.m01 607 PCNNFKENGFCSRGDRCMFSH 627 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence
MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CHDESQHSAA DQNVPQELNQ 60 DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL 120 NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERMAKGNEDD THRPSASLDQ 180 NQSGSDKVAL LTNQEEHDAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM 240 TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD 300 MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKELEEI VCTRTAINSP SHMSEDIEEG 360 EISSDDGMDD RSNDVLLHDT VVLEEKKVPE VQIFKDVLDR KEHSCKVAND KDFGSNSFLV 420 DMVDEGKIEG AELRESSRTE MICRPGVVEG KNVKALKVDE SNPLLEGGRI EMQDNGVRMG 480 IGCPAAGNHG ITSEEMWDDG AFGFVDVTIS NISFCEQCIV QAKERKKRAE KNRELGVKRL 540 KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD 600 HELSKYPCNN FKENGFCSRG DRCMFSHKMP SNEDSATAAC KPELKPPMVL NNSRSQQVNT 660 GGASQQNVHA LAYSTGIHSR NNTKQNVTQT VLKQPEPANK GISFPSILKS SLVHSSMSKQ 720 EGLAPDRNNG AKAGNQIDQS PLSSVQNSIE ILKRTPPVTT PKGINFLSFG KASPDDARGK 780 NQVSHQTSPS VSETVKNLNG MLKANQSAAL QGTHFNPFGK SSVASSSSEK PVSLPSFWNN 840 GSNIDSCGSQ TTADKSQNSS GISLRLPPSP LTSGQSSDRI ASRFCKDTAN SFQRGLFSTL 900 AFAAKYKTQN MNQSIGSTGA QVDNETRNSS ISDSVEIHPP SSAAGIDLRL QVTCNSKLVE 960 SYAHLYPFLL PIEKFDN

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence

MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CHDESQHSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPEQILMDEP ERMAKGNEDD THRPSASLDQ  180
NQSGSDKVAL LTNQEEHDAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM  240
TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD  300
MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKELEEI VCTRTAINSP SHMSEDIEEG  360
EISSDDGMDD RSNDVLLHDT VVLEEKKVPE VQIFKDVLDR KEHSCKVAND KDFGSNSFLV  420
DMVDEGKIEG AELRESSRTE MICRPGVVEG KNVKALKVDE SNPLLEGGRI EMQDNGVRMG  480
IGCPAAGNHG ITSEEMWDDG AFGFVDVTIS NISFCEQCIV QAKERKKRAE KNRELGVKRL  540
KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD  600
HELSKYPCNN FKENGFCSRG DRCMFSHKMP SNEDSATAAC KPELKPPMVL NNSRSQQVNT  660
GGASQQNVHA LAYSTGIHSR NNTKQNVTQT VLKQPEPANK GISFPSILKS SLVHSSMSKQ  720
EGLAPDRNNG AKAGNQIDQS PLSSVQNSIE ILKRTPPVTT PKGINFLSFG KASPDDARGK  780
NQVSHQTSPS VSETVKNLNG MLKANQSAAL QGTHFNPFGK SSVASSSSEK PVSLPSFWNN  840
GSNIDSCGSQ TTADKSQNSS GISLRLPPSP LTSGQSSDRI ASRFCKDTAN SFQRGLFSTL  900
AFAAKYKTQN MNQSIGSTGA QVDNETRNSS ISDSVEIHPP SSAAGIDLRL QVTCNSKLVE  960
SYAHLYPFLL PIEKFDN