PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g250920.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 566aa MW: 62109.8 Da PI: 6.8866

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g250920.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.5e-33	255	312	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Pd.00g250920.m01 255 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 312 8**************************************.*************85 PP
2	WRKY	105.6	2.7e-33	426	484	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+ Pd.00g250920.m01 426 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 484 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MASSSGSLDT SANSHPTFTF STATHPFMTT SFSDLLASGT DEDPSTNTTA RHVGHGGLAD 60 RIAERTGSGV PKFKSLPPPS LPISPPSVSP SSYFAIPAGL SPAELLDSPV LLSTSNILPS 120 PTTGSFAAQA FWKANSGNNQ QIVKQEIKNY SDFSFQTQTR PFTSSSTVFQ SSNGTIQTAQ 180 EQGWSNSYFQ AQEPQKQDDF SSGKSMVKPE YGSVQSFSSG MATNIPNNSQ ANGGFQSEYS 240 NYNHQQSQTL SRKSDDGFNW RKYGQKQVKG SENPRSYYKC TYPNCPTKKK VERSLDGQIT 300 EIVYKGNHNH PKPQNTRRSS SNSSHAIQAS NPNTNEIPDQ SFANHGNSQM DSIGTPENSS 360 ISMGDDDFEQ SSQKSKSGGG DEFDEDEPNA KRWKKEVDNE GISAPGSRTV REPRVVVQTT 420 SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCPVR KHVERASHDL RAVITTYEGK 480 HNHDVPAAPT AMRPVAHQTN NLRQQTSEGQ QAPFTLEMLQ SPGSFGFAGF DNSMGSYMNQ 540 AQLNENMFSK TKEEPRDDAF FESLLC

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MASSSGSLDT SANSHPTFTF STATHPFMTT SFSDLLASGT DEDPSTNTTA RHVGHGGLAD  60
RIAERTGSGV PKFKSLPPPS LPISPPSVSP SSYFAIPAGL SPAELLDSPV LLSTSNILPS  120
PTTGSFAAQA FWKANSGNNQ QIVKQEIKNY SDFSFQTQTR PFTSSSTVFQ SSNGTIQTAQ  180
EQGWSNSYFQ AQEPQKQDDF SSGKSMVKPE YGSVQSFSSG MATNIPNNSQ ANGGFQSEYS  240
NYNHQQSQTL SRKSDDGFNW RKYGQKQVKG SENPRSYYKC TYPNCPTKKK VERSLDGQIT  300
EIVYKGNHNH PKPQNTRRSS SNSSHAIQAS NPNTNEIPDQ SFANHGNSQM DSIGTPENSS  360
ISMGDDDFEQ SSQKSKSGGG DEFDEDEPNA KRWKKEVDNE GISAPGSRTV REPRVVVQTT  420
SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCPVR KHVERASHDL RAVITTYEGK  480
HNHDVPAAPT AMRPVAHQTN NLRQQTSEGQ QAPFTLEMLQ SPGSFGFAGF DNSMGSYMNQ  540
AQLNENMFSK TKEEPRDDAF FESLLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-113	WRKY family protein