PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g250670.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 18094.7 Da PI: 6.2482 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.7 | 6e-41 | 60 | 155 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l++e Pd.00g250670.m01 60 PCAACKLLRRRCAEECPFSPYFSPHEPQKFLAVHKIFGASNVSKMLIEVAENQRADAANSLVYEANLRLRDPVYGCMGVISTLQQQIQSLQQE 152 7******************************************************************************************** PP DUF260 94 lal 96 l++ Pd.00g250670.m01 153 LNA 155 986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MSRDRDIITL DEIGKKIRRE SDPSGDDQMG TMSTARHNSS LGLPQGMMMM NNTTLNTITP 60 CAACKLLRRR CAEECPFSPY FSPHEPQKFL AVHKIFGASN VSKMLIEVAE NQRADAANSL 120 VYEANLRLRD PVYGCMGVIS TLQQQIQSLQ QELNAELSCL IE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 6e-54 | LBD family protein |