PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g250030.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 440aa    MW: 49645.9 Da    PI: 6.9629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g250030.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.72.6e-11113881365
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaal...... 81 
                       +++lL++cAe +s+ d++ a++l++ ls  +sp gd+++Rl++ f++AL+ rl++  ++ ++al++ +t+  +             l      
  Pd.00g250030.m01   1 MRQLLITCAELISQLDFSSARRLISLLSSKSSPFGDSTERLTHQFVKALSLRLNNPNPSSSAALTTAATAVASsssnylL------Leeeddn 87 
                       589****************************************************9999888887777765542233440......2455555 PP

              GRAS  82 .........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgske 156
                                 ++++++P+++fshltaNqaIlea++++ + +Hi+Dfdi++G+QWp+L+qaLa+R+        ++pp+lRiT+ g+    s  
  Pd.00g250030.m01  88 neealhscyLTLNQITPFIRFSHLTANQAILEAIDSShHSIHILDFDIMHGVQWPPLMQALAERSynsdrtvqHPPPMLRITATGH----SLA 176
                       55555554345************************99899*************************766666655699*********....99* PP

              GRAS 157 eleetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                        l +tg+rL kfA++lg+ f+f++l    +++  + +++++L + p+EalaVn+vl lh+l+ ++       + +L+ +ksl+Pkv++++++e
  Pd.00g250030.m01 177 LLLKTGDRLLKFANSLGLAFHFHPLvlndAVRPSDIISPSTLGLLPNEALAVNCVLYLHTLVTDDSREL---SLFLRKIKSLNPKVLTIANKE 266
                       *************************666666678999************************95555544...59******************* PP

              GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqa 337
                       a+hn++ F++rf+eale+y a+fdslea+lp++s+er+ vE +++grei++vv +e+ +rr+rhe++e+ W+ +l++aGF++v+ls +a +qa
  Pd.00g250030.m01 267 ANHNHPLFFNRFVEALEHYGAVFDSLEATLPPNSRERQAVEDVWMGREIRDVVGAEEGRRRQRHEKYETyWEVMLRRAGFENVALSPFALSQA 359
                       ******************************************************************9866*********************** PP

              GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdr 365
                       klllr ++ s+gy++   ++s++l  ++r
  Pd.00g250030.m01 360 KLLLRLHYpSEGYQLRIINDSFFLALSSR 388
                       ***************99999999876555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MRQLLITCAE LISQLDFSSA RRLISLLSSK SSPFGDSTER LTHQFVKALS LRLNNPNPSS  60
SAALTTAATA VASSSSNYLL LEEEDDNNEE ALHSCYLTLN QITPFIRFSH LTANQAILEA  120
IDSSHHSIHI LDFDIMHGVQ WPPLMQALAE RSYNSDRTVQ HPPPMLRITA TGHSLALLLK  180
TGDRLLKFAN SLGLAFHFHP LVLNDAVRPS DIISPSTLGL LPNEALAVNC VLYLHTLVTD  240
DSRELSLFLR KIKSLNPKVL TIANKEANHN HPLFFNRFVE ALEHYGAVFD SLEATLPPNS  300
RERQAVEDVW MGREIRDVVG AEEGRRRQRH EKYETYWEVM LRRAGFENVA LSPFALSQAK  360
LLLRLHYPSE GYQLRIINDS FFLALSSRIY LWLSFDFAPF IALIYAVCPL NNTIKVLKID  420
HFMLSPCLLY HHTSLNPPAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-108GRAS family protein