PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g244410.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 749aa    MW: 82003.6 Da    PI: 6.2898
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g244410.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.3e-2071126156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Pd.00g244410.m01  71 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 126
                       789999***********************************************998 PP
2START218.71.9e-682634861206
                       HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
             START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                       ela +a++el+++a+a+ep+Wv          e++n++e+l++f+++ +      ++ea+r+s++v+m++++lve+l+d++ qW++ +     
  Pd.00g244410.m01 263 ELAVAAMEELIRMAQAGEPLWVPGDhnsshnhEILNEEEYLRTFPRGIGptplgLKSEASRESALVIMNHVNLVEILMDVN-QWSTVFCgivs 354
                       57899*****************77677789****************999********************************.******99999 PP

                       EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
             START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                       +a+tl+ +s+g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p    v R++++pSg+li++++ng+sk
  Pd.00g244410.m01 355 RAMTLDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHVDGTWAVVDVSLDNLRPSP----VSRSRRRPSGCLIQELPNGYSK 443
                       *****************************************************************98....79******************** PP

                       EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       v+wvehv++++r++h+++r+lv+sgla+gak+wv tl+rqce+
  Pd.00g244410.m01 444 VIWVEHVEVDDRSVHNIYRPLVNSGLAFGAKRWVTTLDRQCER 486
                       *****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MYQPSMFENH HHILDHMTAS STHKTSESTE VLGKSRLLDD DFETKSGTET TTDAPSGDEQ  60
DPNNTGPRPK RKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN  120
KRTQMKAQHE RHENSILKSE NDKLRAENNR YKEALGNATC PNCGGPAALG EMSFDEQHLR  180
IENARLREEI DRISSIAAKY VGKPLSSSFS SHIPPHVPSR SLDLGVGSFG AQSGFVGEMY  240
GSSSDLLRSV SVPTDADKPM IVELAVAAME ELIRMAQAGE PLWVPGDHNS SHNHEILNEE  300
EYLRTFPRGI GPTPLGLKSE ASRESALVIM NHVNLVEILM DVNQWSTVFC GIVSRAMTLD  360
ILSTGVAGNY NGALQVMTAE FQVPSPLVPT RENYFVRYCK QHVDGTWAVV DVSLDNLRPS  420
PVSRSRRRPS GCLIQELPNG YSKVIWVEHV EVDDRSVHNI YRPLVNSGLA FGAKRWVTTL  480
DRQCERLASS MASNIPAGDL CVITSPEGRK SMLKLAQRMV MSFCTGVGAS TAHAWTTLSA  540
TGSDDVRVMT RKSMDDPGRP PGIVLSAATS FWIPVPPKRV FDFLRDENSR TEWDILSNGG  600
LVQEMAHIAN GRDPGNSVSL LRVNSANSSQ SNMLILQESC TDSTGSYVIY APVDIVAMNV  660
VLSGGDPDYV ALLPSGFAIL PDGPTGPAGG GGGILDVGSG GSLLTVAFQI LVDSVPTAKL  720
SLGSVATVNN LIKCTVERIR AAVTCEQNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein