PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g234350.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 378aa MW: 42796.3 Da PI: 8.9791

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g234350.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e Pd.00g234350.m01 76 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 119 79***************************************987 PP
2	QLQ	57.8	3.3e-20	8	43	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy++++ +Pp+Ll+ i++ Pd.00g234350.m01 8 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSIKR 43 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP 60 HIGWSCFQMG LGRKVDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV 120 FKTPITTNSN PSSSTPTTIS SITSKNNPPS TSTPTFHSLS SSLSSLSSES HHTQLNHSSY 180 KTNLDHHPFL YHHASSSRPP GFGLSHQKRN TSLLLDSGSY PQASSEYRNR YVYGLKEEVD 240 EHAFFSEPSG SVRDFSGSSS MDDSWQFTPL TMSTCTSSSS KQRSCSALQS EHSHLQLQSN 300 ITPKQQNYYA LGSDMKMDRN EGTQKTIHRF FDEWPLKDKD SWLDLDDKSS NSGSVSNTRL 360 SISTHDFPIF SSRNHNDD

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP  60
HIGWSCFQMG LGRKVDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV  120
FKTPITTNSN PSSSTPTTIS SITSKNNPPS TSTPTFHSLS SSLSSLSSES HHTQLNHSSY  180
KTNLDHHPFL YHHASSSRPP GFGLSHQKRN TSLLLDSGSY PQASSEYRNR YVYGLKEEVD  240
EHAFFSEPSG SVRDFSGSSS MDDSWQFTPL TMSTCTSSSS KQRSCSALQS EHSHLQLQSN  300
ITPKQQNYYA LGSDMKMDRN EGTQKTIHRF FDEWPLKDKD SWLDLDDKSS NSGSVSNTRL  360
SISTHDFPIF SSRNHNDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-55	GRF family protein