PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g221840.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 443aa MW: 47668.9 Da PI: 6.7904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g221840.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.5	3.2e-15	272	317	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Pd.00g221840.m01 272 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKNLQ 317 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRLQ 60 AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPPPSKPP FDSSGGGASG ELVSWFDHHR 120 TTAVRSTAVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS 180 GATGAATQDD DTKLSGKHGS LSNVPETPEW SSRSQSVSGS ATFGMDNQPV TLDSTKASDH 240 DSREAGDEDD RKKRSTGKSS VSTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT 300 DKASMLDEVI EYLKNLQAQI QMMSRMNMPA MMLPMAMQQQ LQMSMMAAAP RNMGMGMGMG 360 MDMNTMVRPN IAGISPVLHP TAFMPMASWD GSGGDRSASA TVMPDPLSAF LACQSQPMTM 420 DAYSMMAAMY QQFHQPPASS SKS

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MNQCVPSWDL DDISTPPAPR LSLRSSTPSA DVPMLDYEVA ELTWENGQVA MHGLGLPRLQ  60
AKPSLTTAKY TTWDKPRASG TLESIVNQAT STLPPPSKPP FDSSGGGASG ELVSWFDHHR  120
TTAVRSTAVT PSTTMTMDAL VPCRNQSDNS SSHMMESMSM PVVISGSDVV GCSTGVESCS  180
GATGAATQDD DTKLSGKHGS LSNVPETPEW SSRSQSVSGS ATFGMDNQPV TLDSTKASDH  240
DSREAGDEDD RKKRSTGKSS VSTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT  300
DKASMLDEVI EYLKNLQAQI QMMSRMNMPA MMLPMAMQQQ LQMSMMAAAP RNMGMGMGMG  360
MDMNTMVRPN IAGISPVLHP TAFMPMASWD GSGGDRSASA TVMPDPLSAF LACQSQPMTM  420
DAYSMMAAMY QQFHQPPASS SKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	281	ERKRRD
2	277	282	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-85	bHLH family protein