PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g210110.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1028aa MW: 111911 Da PI: 9.4489

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g210110.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.6	7.8e-12	4	27	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+e+C++f+r G C++GdrCkF H+ Pd.00g210110.m02 4 KREPCKYFQR-GSCQFGDRCKFLHV 27 89******.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1028 aa Download sequence
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN 60 NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS 120 IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DTSYEELRAA AYDDAKHGLN MQSIIERERN 180 LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL 240 NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGSRGSQFP ATAHVNVFPL 300 STGFGNTGVM RHETNPFSTL AVSSQIPSAT TGLPSILSDG PTSASNAVRQ STTEVQFLTN 360 MQREKISGET SIWLKKIWSP GEIPEEEPPD ALVEFQSLEM LRKEGLPPIV RPNIPIIFCN 420 ICKGFCIYLM LYTVPVKSAA TSSTSSGEGS LGVVKVDPTL NFENPRLRQA YIALQAWKAA 480 IFSDPFNFTS SWNGSDVCSY MGVFCAPMST GAHGRVVAGI DLNHADIASY LPPELGLLSD 540 LALFHLNSNR FCGVVPSSLR RMKLLHELDL SNNRFVGDFP KVVFSLPSLK YLDLRFNKFE 600 GSVPSQLFDK DLDAIFLNDN RFQFGIPPNL GNSPVSVMVL ANNNLGGCIP GSIGNMAKTL 660 NEIILSNDNL TGCLPPQIGL LTNLTVFDVS FNRLQGPLPS TIGKNMKSLE ELDVARNRLT 720 GVIPASICQL PRLHNFTYSF NYFTGEAPAC AANKNNINGR KNCIRGKLDQ RSARECASPA 780 ARPVDYRKLQ CSSTTSPGGG GGSGGGSKRR PPPPSAPVGN KPPAQRRPPR VSTPPPPTSE 840 SSPSTRSHPP PPSNPSSSSS SPPLVPNRAP PPSNSNSHSH SPTKPPPPTQ RVSPRTHLPP 900 SPPPSRSHHH WTLTPPPPPT QNVSPTTHLR PPPPPLPTHY NSSSSPPPPV LYHASPPDHS 960 KHDLVSPSPP NQYSIQKYHL LPPHMSIIHQ KLHHHPQVQV EVPHMIRHQP PHQVSHLIPY 1020 LHCRPPVV

Sequence ? help Back to Top

Protein Sequence Length: 1028 aa Download sequence

MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG PQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKPF ENKWSRFSSQ TASAAPSSQK SDKQPQATNH RCTDPDSCRS  120
IIIEDNEHES PLWKLTCYGH WKNFPCDIVG DTSYEELRAA AYDDAKHGLN MQSIIERERN  180
LLNTKLIEFD KLCKPQGALL KPNHSSQNPF PSASQNAFLQ AANNSAAPSL SSFSQLGTSL  240
NTGFGPRPSA PSNNGFAQLN PFANSTQTSS GFGTNNFLSG SAGSRGSQFP ATAHVNVFPL  300
STGFGNTGVM RHETNPFSTL AVSSQIPSAT TGLPSILSDG PTSASNAVRQ STTEVQFLTN  360
MQREKISGET SIWLKKIWSP GEIPEEEPPD ALVEFQSLEM LRKEGLPPIV RPNIPIIFCN  420
ICKGFCIYLM LYTVPVKSAA TSSTSSGEGS LGVVKVDPTL NFENPRLRQA YIALQAWKAA  480
IFSDPFNFTS SWNGSDVCSY MGVFCAPMST GAHGRVVAGI DLNHADIASY LPPELGLLSD  540
LALFHLNSNR FCGVVPSSLR RMKLLHELDL SNNRFVGDFP KVVFSLPSLK YLDLRFNKFE  600
GSVPSQLFDK DLDAIFLNDN RFQFGIPPNL GNSPVSVMVL ANNNLGGCIP GSIGNMAKTL  660
NEIILSNDNL TGCLPPQIGL LTNLTVFDVS FNRLQGPLPS TIGKNMKSLE ELDVARNRLT  720
GVIPASICQL PRLHNFTYSF NYFTGEAPAC AANKNNINGR KNCIRGKLDQ RSARECASPA  780
ARPVDYRKLQ CSSTTSPGGG GGSGGGSKRR PPPPSAPVGN KPPAQRRPPR VSTPPPPTSE  840
SSPSTRSHPP PPSNPSSSSS SPPLVPNRAP PPSNSNSHSH SPTKPPPPTQ RVSPRTHLPP  900
SPPPSRSHHH WTLTPPPPPT QNVSPTTHLR PPPPPLPTHY NSSSSPPPPV LYHASPPDHS  960
KHDLVSPSPP NQYSIQKYHL LPPHMSIIHQ KLHHHPQVQV EVPHMIRHQP PHQVSHLIPY  1020
LHCRPPVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	2e-58	C3H family protein