PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g193400.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 376aa MW: 42526 Da PI: 8.8136

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g193400.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e Pd.00g193400.m02 76 DPEPGRCRRTDGKKWRCSKEAFADSKYCERHMHRGKNRSRKPVE 119 79***************************************987 PP
2	QLQ	57.8	3.2e-20	8	43	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+q+L++Q+l+yKy++++ +Pp+Ll+ i++ Pd.00g193400.m02 8 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSIKR 43 8*******************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP 60 HIGWSCFQMG LGRKVDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV 120 FKTPITTNSN PSSSTPTTIS SITSKNNPPS TSTPTFHSLS SSLSSLSSES HHTQLNHSSY 180 KTNLDHHPFL YHHASSSRPP GFGLSHQKRN TSLLLDSGSY PQASSEYRYV YGLKEEVDEH 240 AFFSEPSGSV RDFSGSSSMD DSWQFTPLTM STCTSSSSKQ RSCSALQSEH SHLQLQSNIT 300 PKQQNYYALG SDMKMDRNEG TQKTIHRFFD EWPLKDKDSW LDLDDKSSNS GSVSNTRLSI 360 STHDFPIFSS RNHNDD

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MSGRTRFPFT PSQWQELEHQ ALIYKYMVSG ISIPPDLLFS IKRSCLDSPL PSKLFSHHPP  60
HIGWSCFQMG LGRKVDPEPG RCRRTDGKKW RCSKEAFADS KYCERHMHRG KNRSRKPVEV  120
FKTPITTNSN PSSSTPTTIS SITSKNNPPS TSTPTFHSLS SSLSSLSSES HHTQLNHSSY  180
KTNLDHHPFL YHHASSSRPP GFGLSHQKRN TSLLLDSGSY PQASSEYRYV YGLKEEVDEH  240
AFFSEPSGSV RDFSGSSSMD DSWQFTPLTM STCTSSSSKQ RSCSALQSEH SHLQLQSNIT  300
PKQQNYYALG SDMKMDRNEG TQKTIHRFFD EWPLKDKDSW LDLDDKSSNS GSVSNTRLSI  360
STHDFPIFSS RNHNDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-55	GRF family protein