PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g192920.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 296aa    MW: 31842.7 Da    PI: 8.6761
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g192920.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.5e-13556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+e l  +vk++G+g Wk I +          R+  ++k++w++ 
  Pd.00g192920.m01  5 KQKWTSEEEEALRAGVKKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                      79***********************************9************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV KKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSG  60
MNPRDKSRAP KAKANADAPA ASVSVSQTSA AASAKRDAPA AATATARRDA PAVTPARRDA  120
PAATPARRDA PAATPVRHDA PAAPVADDSS TGLSDAKTAP AYDAMIFEAL STSTGLNGLD  180
SGAIASFIEQ RNEIPPNFRR SLSNRLRRLV HQEKLEKIQN CYRSKAPKQK DIHPIEESAV  240
AAAYKIADAE NKSFVAAEAV KELERLSEMA EEAESTLQVA AEILEKCSEG EVLLMA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-28MYB_related family protein