PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g192610.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 604aa MW: 66920.2 Da PI: 7.1632

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g192610.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	311	333	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Pd.00g192610.m01 311 RLCFKFVSSGSCPRGENCNFQHD 333 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MAPPKILLCG DVLGHLKQLF KRVNKSAGPF DALFCVGQFF PDSADQLDEF NDYIEGRAQI 60 PLPTYFIGDY GVAATKVLLA ATKDSGNQGF KLDGLKICNN LYWLKGSGKF KLRGLSVAYL 120 SGLQCSDSQQ FGTYSQDDVD VLRAVAEEPG IIDLFLTNKW PSGITNRAAA SDVPPGASEP 180 FGSDSTVAEL VAEIKPRYHI AGTKGVYYAR EPYSNVDAVH ATRFLGLAPV GNKDKQKFIH 240 AISPTPASTM STVEISTKSP TTTLSPYTYG EKTDHATEAG KRSSDSISDS QYWRYDVNQK 300 RQKHGAGDGN RLCFKFVSSG SCPRGENCNF QHDVDAREQS LRGVCFDFMN KGKCERGQDC 360 KFKHSLQAEG ESNSHQRRGS GNANSNRSTE CWFCLSSPKV ESHLIISIGE HYYCALAKGP 420 LVEDHVLLIP IGHSPNTLSL PAECEIELGK FQDALKQYYK KQGKDVVFFE WASKRTTHAN 480 LQAVPVPSAK SAAVQNIFNL AAEKLSFKFE TMKSGNNSDG RKMLRTQFDR NFSFFYVQLP 540 DDTILSHSIE ENERFLPQFG REVIAGLLNK ADRADWRNCT DSKEEEAKMA GDFKSGFEEF 600 DPNK

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MAPPKILLCG DVLGHLKQLF KRVNKSAGPF DALFCVGQFF PDSADQLDEF NDYIEGRAQI  60
PLPTYFIGDY GVAATKVLLA ATKDSGNQGF KLDGLKICNN LYWLKGSGKF KLRGLSVAYL  120
SGLQCSDSQQ FGTYSQDDVD VLRAVAEEPG IIDLFLTNKW PSGITNRAAA SDVPPGASEP  180
FGSDSTVAEL VAEIKPRYHI AGTKGVYYAR EPYSNVDAVH ATRFLGLAPV GNKDKQKFIH  240
AISPTPASTM STVEISTKSP TTTLSPYTYG EKTDHATEAG KRSSDSISDS QYWRYDVNQK  300
RQKHGAGDGN RLCFKFVSSG SCPRGENCNF QHDVDAREQS LRGVCFDFMN KGKCERGQDC  360
KFKHSLQAEG ESNSHQRRGS GNANSNRSTE CWFCLSSPKV ESHLIISIGE HYYCALAKGP  420
LVEDHVLLIP IGHSPNTLSL PAECEIELGK FQDALKQYYK KQGKDVVFFE WASKRTTHAN  480
LQAVPVPSAK SAAVQNIFNL AAEKLSFKFE TMKSGNNSDG RKMLRTQFDR NFSFFYVQLP  540
DDTILSHSIE ENERFLPQFG REVIAGLLNK ADRADWRNCT DSKEEEAKMA GDFKSGFEEF  600
DPNK