PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g180520.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 390aa    MW: 44030.4 Da    PI: 3.9433
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g180520.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.9e-09554250
                      ---SHHH.HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  2 rienksn.rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      r++n ++ +++  +kR  ++  KA  LS LCd+ v +i ++ +gk+ +++
  Pd.00g180520.m01  5 RVSNAMKpQKTAMAKRGSTLKNKAGRLSKLCDIAVYMIAVGADGKINDWP 54
                      55666552468899***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MKMKRVSNAM KPQKTAMAKR GSTLKNKAGR LSKLCDIAVY MIAVGADGKI NDWPENQQDL  60
KSVLLEYKNL KRGFKDRIEK GLFFVEKGFL EIVDDRENRD LGIQDNCLGA NFMDLYKNIM  120
EPDAADQQQL SSLNLNLNLH PTDLVVPTPK PNLIGEINLN LDPGDLVIPT PKPNLVGQIN  180
LNLDPGNVVV PTPKPNLIGQ FQQDYLSSIH EPTVDANDYL SLGNDDHNDI GLMEDYLQLY  240
DLELPEEPQE QLQPQSPSLP SVEISDDDMK LLLSDCEIGL MEDDMQFCDN LDDYEPTVDT  300
IYDFLSCVLG GEDENDNSAM EDEVQPQSTN HITDDEHDDI RLLLTDCEIG LMQEDLQFCD  360
NDLSDFLVPL ETMLLQDPQH QHHSELNLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27090.27e-08M-type_MADS family protein