PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g177240.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 868aa    MW: 94936.4 Da    PI: 6.1168
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g177240.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.8e-24132233199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Pd.00g177240.m01 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 220
                       99*****************************8544444..48************************************************..8 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Pd.00g177240.m01 221 NEKNQLLLGIRRA 233
                       899999****997 PP
2Auxin_resp118.74.8e-39258341183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  Pd.00g177240.m01 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWTNSHWRSVK 341
                       79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    
MRLSSSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWTNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGIPSFH GLKDGDMGIN APLMWLQGGV GDQGIQSLNF  420
QGFGVTPWMQ PRLDASMAGL QPEVYQAMAA AALQEMRAVD SSKCASQSLL PFQQSSNVSN  480
GSAAVLQRQV LPQSQSQNTY LQSFQENQAP AQAQQIPNVM SALSNFASAT QSQSASLQAI  540
PSQPQQQSFP DPVGNPISSS DVPPIHSILG SLSQDGASHL LNLSGSNSVI SSSLLPKQIA  600
GEQQLSSGAA QCVLPQVEQL GTPQSNISEL TALPPFPGRE YSAFQGGTDP QSNLLFGVNI  660
DSSSLMLHNG IPTLRNIGNG NDSLSMPFGA SSYTSATGND FPLNSDMTTS SCVDESGFLQ  720
SSENVDQVNP TRNFVKVHKS GSFGRSLDIS KFSSYDELRS ELARMFGLEG QLEDPQRSGW  780
QLVFVDREND VLLLGDDPWQ EFVNNVWYIK ILSPLEVQQM GKEGPNRAAS VPSNKLSNGG  840
NNTCDDYVSR QDLRNSTNGI ASLGSLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein