PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g172220.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 293aa MW: 33493.8 Da PI: 10.1936 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.5 | 2.3e-15 | 29 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Liea e++ +l+rg+l++++Weev++++ +r+ +qCk++ + l+k+yk ++++ ++ + + +s +p+f+ l+ Pd.00g172220.m02 29 CWSEDATFTLIEAWGERHLSLNRGNLRQKHWEEVADAVnashvtaDNPRSRRTDVQCKNRVDTLKKKYKIETARVSDSNGDYTSPWPFFSLLD 121 7*************************************99999966666789*********************99999999999*****9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence |
MDFVAGSPSP VTAPRPPSKT ASVPVREDCW SEDATFTLIE AWGERHLSLN RGNLRQKHWE 60 EVADAVNASH VTADNPRSRR TDVQCKNRVD TLKKKYKIET ARVSDSNGDY TSPWPFFSLL 120 DSLIGSKFPN PSPPLPRRCS PSPPLPRRSP PSPPLQWTFP VARRSATVKR PAPAFFPAPG 180 DEQSEESEGS PSRSSVGGSR MRDRDREVGC VELAMAIERF AEIYERVEQR KQRQMVELEK 240 QRMQFAKDLE YHRMQLFMET TKHQLRKMKR AKRSSSSPDN YLEATRFDSH RLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 272 | LRKMKRAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 7e-67 | Trihelix family protein |