PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g163660.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

RAV

Protein Properties

Length: 411aa MW: 46558.6 Da PI: 7.7131

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g163660.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.6	7.2e-09	83	131	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++kGV + +g W A+I+ + r++lg+f ++ +Aa ++ a++kl+g Pd.00g163660.m01 83 KKFKGVVEQP-NGHWGAQIYA------NhERVWLGTFNSEIDAAMGYDSAALKLRG 131 589*8666.8**999......44******99***********98 PP
2	B3	79.3	4.1e-25	212	303	1	83
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+p k+a ++ g+++ +s +lt++d+ rsW+++++++k+s+++v+tkGW++Fv+ ++L+++D++ F Pd.00g163660.m01 212 FQKELTPSDVGKLNRLVIPSKYACTYfptvseairGKVESCSSQLTFYDRMMRSWTFRFCFWKSSKSFVFTKGWSRFVRTHDLQAKDTIRFL 303 99*******************999*****9999************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MTDRRENFLI QEVLIVVLAS RATDYLLLPF ICSRLINKKH IMEEGMSSTV SNSGMKMNTV 60 GGVSDSSLAA NDSTDGACKR VSKKFKGVVE QPNGHWGAQI YANHERVWLG TFNSEIDAAM 120 GYDSAALKLR GRDCHRNFPW TETTFEEQHF QNQHATEVVL IMIKDGSYQT KFSEFRRSRS 180 GIESVGADVQ FGGLARVQSS NGKGELLEDF LFQKELTPSD VGKLNRLVIP SKYACTYFPT 240 VSEAIRGKVE SCSSQLTFYD RMMRSWTFRF CFWKSSKSFV FTKGWSRFVR THDLQAKDTI 300 RFLQCRYKQS GDGNYKEQPH SFCMIQVKKD GGRSNDVSCL VENNANSYQF DGVRNDGGMM 360 DLDYKFKVEA VSPNIHEDED GILLADQKKC FRLFGVEISD VDVLSSHSIV V

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MTDRRENFLI QEVLIVVLAS RATDYLLLPF ICSRLINKKH IMEEGMSSTV SNSGMKMNTV  60
GGVSDSSLAA NDSTDGACKR VSKKFKGVVE QPNGHWGAQI YANHERVWLG TFNSEIDAAM  120
GYDSAALKLR GRDCHRNFPW TETTFEEQHF QNQHATEVVL IMIKDGSYQT KFSEFRRSRS  180
GIESVGADVQ FGGLARVQSS NGKGELLEDF LFQKELTPSD VGKLNRLVIP SKYACTYFPT  240
VSEAIRGKVE SCSSQLTFYD RMMRSWTFRF CFWKSSKSFV FTKGWSRFVR THDLQAKDTI  300
RFLQCRYKQS GDGNYKEQPH SFCMIQVKKD GGRSNDVSCL VENNANSYQF DGVRNDGGMM  360
DLDYKFKVEA VSPNIHEDED GILLADQKKC FRLFGVEISD VDVLSSHSIV V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50680.1	8e-80	RAV family protein