PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g155200.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 19335.5 Da PI: 4.38 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 55.7 | 1.4e-17 | 6 | 80 | 27 | 101 |
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +f +h +FGa++++++l+ lp ++r a ++++eA+ara dP+yGa++ il+lq+q+ + +a+l++++e+l Pd.00g155200.m01 6 ITDFSSIHNVFGANKMSRILSMLPMSKRAVASWTMTFEAHARAVDPIYGATSYILDLQEQVLNIQAQLDEAHEQL 80 5789******************************************************************99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MHEEAITDFS SIHNVFGANK MSRILSMLPM SKRAVASWTM TFEAHARAVD PIYGATSYIL 60 DLQEQVLNIQ AQLDEAHEQL ACAIAPVADP NQDLENSIEQ SEVANPTEQT AVAKPTEFES 120 LPQFSFTHTN NVYNENMNLN YHVSGSYKNT VNIPTENVAD GWVNNEVKVY ARM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-22 | LBD family protein |