PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g155190.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 337aa    MW: 37219.3 Da    PI: 6.1795
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g155190.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26056.67.4e-18877169
            DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69
                      +C +Ck+l+++C+++C++apyf +e+   +f  +h +FGa+++ ++l  lp +er  a  ++++eA+ara
  Pd.00g155190.m01  8 PCGGCKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGARKMPRILFMLPMSERVLASWTMTFEAHARA 77
                      7*********************999856****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MSSRTFNPCG GCKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM PRILFMLPMS  60
ERVLASWTMT FEAHARAVLN IQAQLDEAHE QLARAVAPVA NPNQDLESSN EQSEVANPTE  120
QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV ANGWVNNEDT  180
EGQIASGASS GDIALKSHHQ PRDGPFELND IFAIINVVPA IALLSYGFFN KGLFPGLCFG  240
AGLGITTFGM AYMFVHDGLV HRRFPVGPIA DVPYLQKVAA AHYLHHSCIL NGVPYGLFLG  300
PKVLAISDGK LVEYDEPMKL MNNEGSLFGQ LVKEYWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-24LBD family protein