PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g145510.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 752aa MW: 84584.2 Da PI: 6.9387

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g145510.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	113.8	9.8e-36	137	212	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv++C++d++e+k yhrrh+vC ++++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k Pd.00g145510.m01 137 RCQVPSCRSDIKELKGYHRRHRVCLACANASTVFLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRK 212 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MEGPASPSST QSQQQRLDEA RFSEMEIQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS 60 AEIDPALALE DLPEDPNSNS GRVRKRDPRL ACTNFLAGHV PCACPEIDER MMELEEEEAG 120 HGKKRVKTAR APPGTARCQV PSCRSDIKEL KGYHRRHRVC LACANASTVF LDGETKRYCQ 180 QCGKFHVLSD FDEGKRSCRR KLERHNNRRR RKPINSKGGI RKESQREIQI EDTNCDGGAG 240 EDSIQLSSQL NDKEELPECE GGRISTLSSV PDSQIVHSDG GASLVASGET QMDGRKHDSN 300 NSLSPPNCDK SAYSSMCPTG RISFKLYDWN PAEFPRRLRH QIFQWLASMP VELEGYIRPG 360 CIILTVFIAM PKFMWMKLLE DPVSYIHDFV VVPGRMLSGR GNILVYLNDM IFRVVKDGTS 420 VIKGKVEMRA PRLHYVHPRY FEAGKPMEFV ACGSDLLQPK FRFLVSFSGK YLAYNYYPES 480 SPSQIEGDTA TNLDHQLYKI RVPQTEANRF GPAFIEIENE SGLSNFLPIL IADKEIMTAS 540 QIQRFNYLLN FLISIKSTTI LEKVSQNLKT LMDNMELHSA NDGTSDADMR LLKNYMDYAR 600 DRQKIDNSGV LVPRSGRLVQ KEDIVSQSQS CSQNVGNLVV PLQCQDTEIT VDGRVDVMVG 660 STSHERSETV PLLSKKAVMK ANLIKKWPRV ANFCTSGEVS RSRSSGAFLR FRPVLYVICA 720 AAICLGFCAV LFHPHEVGEF AVTIRRCLFD DF

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MEGPASPSST QSQQQRLDEA RFSEMEIQPP LPNQDTSTVW DWGDLLDFTV DDDLSISWGS  60
AEIDPALALE DLPEDPNSNS GRVRKRDPRL ACTNFLAGHV PCACPEIDER MMELEEEEAG  120
HGKKRVKTAR APPGTARCQV PSCRSDIKEL KGYHRRHRVC LACANASTVF LDGETKRYCQ  180
QCGKFHVLSD FDEGKRSCRR KLERHNNRRR RKPINSKGGI RKESQREIQI EDTNCDGGAG  240
EDSIQLSSQL NDKEELPECE GGRISTLSSV PDSQIVHSDG GASLVASGET QMDGRKHDSN  300
NSLSPPNCDK SAYSSMCPTG RISFKLYDWN PAEFPRRLRH QIFQWLASMP VELEGYIRPG  360
CIILTVFIAM PKFMWMKLLE DPVSYIHDFV VVPGRMLSGR GNILVYLNDM IFRVVKDGTS  420
VIKGKVEMRA PRLHYVHPRY FEAGKPMEFV ACGSDLLQPK FRFLVSFSGK YLAYNYYPES  480
SPSQIEGDTA TNLDHQLYKI RVPQTEANRF GPAFIEIENE SGLSNFLPIL IADKEIMTAS  540
QIQRFNYLLN FLISIKSTTI LEKVSQNLKT LMDNMELHSA NDGTSDADMR LLKNYMDYAR  600
DRQKIDNSGV LVPRSGRLVQ KEDIVSQSQS CSQNVGNLVV PLQCQDTEIT VDGRVDVMVG  660
STSHERSETV PLLSKKAVMK ANLIKKWPRV ANFCTSGEVS RSRSSGAFLR FRPVLYVICA  720
AAICLGFCAV LFHPHEVGEF AVTIRRCLFD DF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	211	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein