PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g136900.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 422aa MW: 45855.1 Da PI: 9.2077 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.2 | 9.7e-14 | 81 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Pd.00g136900.m01 81 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 129 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 96.2 | 2.1e-30 | 219 | 332 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+ tpsdv+k++rlv+pk++ae+h gg+ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L+ Pd.00g136900.m01 219 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtttstsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLQ 311 89****************************999998888888876676799****************************************** PP TT-EEEEEE-SSSEE..EEEE CS B3 76 egDfvvFkldgrsefelvvkv 96 +gD+v F+++ ++++l++ + Pd.00g136900.m01 312 AGDIVSFQRSTGQDKQLYIDW 332 ********8766777777765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 422 aa Download sequence |
MDGISLSSTE ESTTSDSISI SPNNHLLPTT IAMSPIAKSS PHADSLCRLG SGASSVILDS 60 EISSGGVGGG IEAESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAAKAY 120 DVAAQRFRGR DAVTNFKPSP TGTGTDDDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE 180 QSKRNNYGFL DANGKRARAH GSLGPFGSDR VPKAREQLFE KAVTPSDVGK LNRLVIPKQH 240 AEKHFPLQSG NNFNNHTTTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG 300 WSRFVKEKNL QAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQPVQMVR 360 LFGVNIFKIP GSGGGAVVDA ATAAAIGGGS CNNNINNVGK RMREMELLEL EFSKKPRIIG 420 AL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-128 | RAV family protein |