PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g132910.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 380aa MW: 41389.2 Da PI: 8.613

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g132910.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.2	1.2e-10	99	142	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a + ++ + +W++Ia+ ++ g+t +++k+++ Pd.00g132910.m01 99 WSREQDKAFENALATYPEDssdRWEKIAADVP-GKTIEEIKHHYE 142 ******************************.********96 PP
2	Myb_DNA-binding	43.3	8.5e-14	209	253	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Pd.00g132910.m01 209 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 253 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MVDDREIFYH SMWLFFTENK VGNFGWGFTK YSLAMDSNIF HISHKSAIQR CPIIELWSKS 60 PLKSSHASLS LASLAFSGSK SQEQFWTVDS FRPGSSSLWS REQDKAFENA LATYPEDSSD 120 RWEKIAADVP GKTIEEIKHH YELLVDDINQ IEAGFVPLPC YNSSSEGSTS HASDEGTNKK 180 GGHSGNYGSE SNHGTKASRA DQERRKGIAW TEDEHRLFLL GLEKYGKGDW RSISRNFVVT 240 RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVNNGDI SSPQGPITGQ ANGSAVGSSG 300 KSTKQSPAGP PGPGVGMYGA PTIGQPIGGP LVSAVGTPVN LPAGPPHMAY GLRAPVPGVV 360 PGAPMNMVPM TYPMPHTSHR

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MVDDREIFYH SMWLFFTENK VGNFGWGFTK YSLAMDSNIF HISHKSAIQR CPIIELWSKS  60
PLKSSHASLS LASLAFSGSK SQEQFWTVDS FRPGSSSLWS REQDKAFENA LATYPEDSSD  120
RWEKIAADVP GKTIEEIKHH YELLVDDINQ IEAGFVPLPC YNSSSEGSTS HASDEGTNKK  180
GGHSGNYGSE SNHGTKASRA DQERRKGIAW TEDEHRLFLL GLEKYGKGDW RSISRNFVVT  240
RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVNNGDI SSPQGPITGQ ANGSAVGSSG  300
KSTKQSPAGP PGPGVGMYGA PTIGQPIGGP LVSAVGTPVN LPAGPPHMAY GLRAPVPGVV  360
PGAPMNMVPM TYPMPHTSHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-115	MYB family protein