PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1306120.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 702aa MW: 77090.6 Da PI: 10.3864

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1306120.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.6	7.7e-10	40	86	2	41
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqck 41 +W t+E++ll++avk++G ++W+++a +++ + t+++ck Pd.00g1306120.m02 40 SSWGTWEELLLACAVKRHGINDWDSVAMELQaktslphLLTTAYNCK 86 57*****************************8888888777888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MMEGATGGTA NHDAIATHTN NNNSNNSEPE LQDQTTTFTS SWGTWEELLL ACAVKRHGIN 60 DWDSVAMELQ AKTSLPHLLT TAYNCKLNIP WLDDLRKLRV AQLRQELHRN DVSIVSLQLK 120 VKRLEEERED SSKDDEAKPD LEEEDSKGHR SENDKNIQDE PDRSKPDQEN QSVNGSNSTC 180 SKSLDNKPGR EDRVASEPEP HPVPDGSREP TKGTGGGGHS ESESDKGSSE TVAKKRSREG 240 KGGGDSAGEM RESSEAQSSA SLTRKWNRKR RRRVEVPEQQ RNNEELLLVK SQPLVGVLQM 300 IRAHEHSSLF ERRLPTQESD KYKSMVQQHV DLETIQSKLH KDAYSSCALS FYRDLLLLFN 360 NAVVFFPKSS LESLTAHQLR RLVLNEMKKN NLITRPPPNP SPSSEPSDSL PAAAVHAPPP 420 TTTPPCPPPP TQPPKRPDQL ERSDSLLAKH KSTAPIIVCR KRSSISSKPS AAASIFDVKP 480 KGEQQQPKQQ QQGDEKKKAA AFDVKTPINN NKASSKDDVA EEHKGGGAGA KAKDNPVTTG 540 TRSSRRTHHE NNKKDASGST KKQTETPKAD KKSKTETAAL DKKRSAAADF LKRIKRNAPA 600 ADTLKSGSGS GSGTSTRSGG GEQKRRGGGK VDKVKERVLR QSGGDKKKQA KEESSSPSKR 660 SVGRPPKKAA AETANVVASS KRPRENGGKQ EASRRPRKRS RR

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MMEGATGGTA NHDAIATHTN NNNSNNSEPE LQDQTTTFTS SWGTWEELLL ACAVKRHGIN  60
DWDSVAMELQ AKTSLPHLLT TAYNCKLNIP WLDDLRKLRV AQLRQELHRN DVSIVSLQLK  120
VKRLEEERED SSKDDEAKPD LEEEDSKGHR SENDKNIQDE PDRSKPDQEN QSVNGSNSTC  180
SKSLDNKPGR EDRVASEPEP HPVPDGSREP TKGTGGGGHS ESESDKGSSE TVAKKRSREG  240
KGGGDSAGEM RESSEAQSSA SLTRKWNRKR RRRVEVPEQQ RNNEELLLVK SQPLVGVLQM  300
IRAHEHSSLF ERRLPTQESD KYKSMVQQHV DLETIQSKLH KDAYSSCALS FYRDLLLLFN  360
NAVVFFPKSS LESLTAHQLR RLVLNEMKKN NLITRPPPNP SPSSEPSDSL PAAAVHAPPP  420
TTTPPCPPPP TQPPKRPDQL ERSDSLLAKH KSTAPIIVCR KRSSISSKPS AAASIFDVKP  480
KGEQQQPKQQ QQGDEKKKAA AFDVKTPINN NKASSKDDVA EEHKGGGAGA KAKDNPVTTG  540
TRSSRRTHHE NNKKDASGST KKQTETPKAD KKSKTETAAL DKKRSAAADF LKRIKRNAPA  600
ADTLKSGSGS GSGTSTRSGG GEQKRRGGGK VDKVKERVLR QSGGDKKKQA KEESSSPSKR  660
SVGRPPKKAA AETANVVASS KRPRENGGKQ EASRRPRKRS RR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	272	RKRRR
2	269	274	KRRRRV
3	694	702	RRPRKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	2e-70	MYB_related family protein