PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1296160.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 381aa MW: 41320.8 Da PI: 9.9867

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1296160.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.9	2.9e-43	77	154	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls+ak y++rhkvC hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+ Pd.00g1296160.m01 77 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 154 6**************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MSSSSMTESG SSSSSSPPNS STESLNGLKF GQKIYFEDAS LGASYKSGSA GSSSSSGATP 60 PKKQRAGHLA HPGQPPRCQV EGCQVDLSDA KAYYSRHKVC GLHSKTPKVI VAGLEQRFCQ 120 QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPQPGSVSAR FGRLSSSLFE NSNKVGSFLM 180 DFTAYPRPAD RDAWAIARTS ERVPVNQNAN AMGKFLQHPW QSNSVTTSSR YLQGSAGGTS 240 YPDPGIPPRE CVTGVADSSC ALSLLSNQPW GSRNRPSGVG MNAYLNTWMN TQGVTVTQPM 300 AHAGTSNHFP TTSLGFKGNE AGSSSHEMLP DLGLGQISQP LSRQYSGVLE LSQQNRRQQH 360 MELGHTRGYD SSTNQQMHWS L

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MSSSSMTESG SSSSSSPPNS STESLNGLKF GQKIYFEDAS LGASYKSGSA GSSSSSGATP  60
PKKQRAGHLA HPGQPPRCQV EGCQVDLSDA KAYYSRHKVC GLHSKTPKVI VAGLEQRFCQ  120
QCSRFHQLPE FDQGKRSCRR RLAGHNERRR KPQPGSVSAR FGRLSSSLFE NSNKVGSFLM  180
DFTAYPRPAD RDAWAIARTS ERVPVNQNAN AMGKFLQHPW QSNSVTTSSR YLQGSAGGTS  240
YPDPGIPPRE CVTGVADSSC ALSLLSNQPW GSRNRPSGVG MNAYLNTWMN TQGVTVTQPM  300
AHAGTSNHFP TTSLGFKGNE AGSSSHEMLP DLGLGQISQP LSRQYSGVLE LSQQNRRQQH  360
MELGHTRGYD SSTNQQMHWS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-70	SBP family protein