PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1295840.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 662aa MW: 72741.8 Da PI: 7.9764

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1295840.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.1	1.1e-06	252	272	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pd.00g1295840.m01 252 PCPEFRK-GSCQKGDVCEYAHG 272 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence
MESGFPKQNS VLVELSASDN LDAFRSEVEE KGFHVDEAGF WYGRRIGSKK MGFEERTPLM 60 IAAMFGSTKV LKYIIQSGKA DVNRSCGSDK VTALHCATAG GSTASLEVVK LLLDASADAN 120 CVNANGNKPI DLIAPALKSP CSSRRKTMEM LLKGDMSVME SDQIANQEGH QQKFPSPQLS 180 KDGSEKKEYP IDIPLPDINN GIYGTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR 240 RDPRKYPYSC VPCPEFRKGS CQKGDVCEYA HGVFESWLHP AQYRTRLCKD ETGCTRKVCF 300 FAHRPEELRP VYASTGSAMP SPRSMSVSAA DMAALSPLAL GSSPMSQPTT STPPMSPLAT 360 SSSPKNGALW QNKVNLTPPA LQLPGSRLKS ALSARDLDLE MELLGLDSHS SQQQKHQHQQ 420 QQQQQLWDEI SRLSSPKCYN NDFSRIGELK PTNLDDAFGS FDPSLLSQLQ GVSLKPSTPT 480 QLQSSAHQIR QNMNQLRSSY PTNLSSSPVR KPSSFGLDSP GALAAAVMNS RSAAFAQRSH 540 SFIDRGAMSH PHGLTAPANS STMMQSSDWG SPGGKLDWGI QGDELNKLKK SASFGFRSSN 600 AGTPTTFMPS AVGEPDVSWV NSLVRDVSSE RSEQKYHHLN KGVHEMLPPW AEQMYIEQEQ 660 RA

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence

MESGFPKQNS VLVELSASDN LDAFRSEVEE KGFHVDEAGF WYGRRIGSKK MGFEERTPLM  60
IAAMFGSTKV LKYIIQSGKA DVNRSCGSDK VTALHCATAG GSTASLEVVK LLLDASADAN  120
CVNANGNKPI DLIAPALKSP CSSRRKTMEM LLKGDMSVME SDQIANQEGH QQKFPSPQLS  180
KDGSEKKEYP IDIPLPDINN GIYGTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR  240
RDPRKYPYSC VPCPEFRKGS CQKGDVCEYA HGVFESWLHP AQYRTRLCKD ETGCTRKVCF  300
FAHRPEELRP VYASTGSAMP SPRSMSVSAA DMAALSPLAL GSSPMSQPTT STPPMSPLAT  360
SSSPKNGALW QNKVNLTPPA LQLPGSRLKS ALSARDLDLE MELLGLDSHS SQQQKHQHQQ  420
QQQQQLWDEI SRLSSPKCYN NDFSRIGELK PTNLDDAFGS FDPSLLSQLQ GVSLKPSTPT  480
QLQSSAHQIR QNMNQLRSSY PTNLSSSPVR KPSSFGLDSP GALAAAVMNS RSAAFAQRSH  540
SFIDRGAMSH PHGLTAPANS STMMQSSDWG SPGGKLDWGI QGDELNKLKK SASFGFRSSN  600
AGTPTTFMPS AVGEPDVSWV NSLVRDVSSE RSEQKYHHLN KGVHEMLPPW AEQMYIEQEQ  660
RA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein