PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g1293420.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 442aa MW: 48793.1 Da PI: 6.9376 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.2 | 6.1e-08 | 346 | 386 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Pd.00g1293420.m01 346 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 386 69******************95.....5****************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 442 aa Download sequence |
MDGSDWDGSY ITNTSTLLWN NHQVHDLEES LLVSSSGPSA FIPIQDFQKV QTSHAIMNSN 60 TERASKSALI VHQQNPCLLD SVHAMPTLRA DQLCQAPWMI NKPNYNLMGS LSAGIFMAAD 120 HYGDTGKHVQ TQVIHGLQDH GRAKPATTRS VESLDCLLSG TNSNTDTSVE DDDGISMLFS 180 DCRRNLWNFG AGNNSAISSG ESENNETVVS QSSSDLYVQS QGNKNSTKRS HDQSELNGAS 240 HSHFGLLQTD SSTTEGGFRL ISENPPNPKK PRSDKRPSSS NINFQRPSSS VSASSIEEPD 300 PEVIAQMKEM IYRAAAFRPV NLGMDMVERP KRKNVKISSD PQTVAARQRR ERISERIRVL 360 QRLVPGGSKM DTASMLDEAA NYLKFLRSQV KALENLGQKI ESMSNSNIPP TSFAFSFNPS 420 FPMQTHHHVP LHNSNHIHQP HS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 347 | 352 | RQRRER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21330.1 | 2e-70 | bHLH family protein |