PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1290980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 577aa MW: 63166.4 Da PI: 7.0578

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1290980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.3e-16	75	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Pd.00g1290980.m01 75 KGGWTPQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 121 688***************************.**********986 PP
2	Myb_DNA-binding	62.7	7.3e-20	127	173	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W++Ia+ ++ gR +kqc++rw+++l Pd.00g1290980.m01 127 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 173 79****************************.***********97 PP
3	Myb_DNA-binding	54.6	2.5e-17	179	222	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Pd.00g1290980.m01 179 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MSSNSIPATS SQAEEEMEEV KLEECCLENK QSTAASSSSV SEGSGSAILK SPGVCSPAST 60 SPTHRRTSGP IRRAKGGWTP QEDETLRNAV AAFKGKSWKK IAEFFPDRSE VQCLHRWQKV 120 LNPDLVKGPW TQEEDDKIIE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH NHLNPDIKKD 180 AWTLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGKLPPA 240 AKNGSQNGAK ETSKSTATKR LLVCSTKGSD STAQTSSGNA DVCKLDEDGK DQFESSAPHQ 300 DLGASSSVLP NEPADSEGVE CQLRSSFRDL SCCNSESGSK FENFAVNSKP QIESIINSQA 360 ESENCGFNNL IDEDRVKRTP VPVETPGYGS LYYEPLLESC GPFDSGFSSM RCFQHDYSSS 420 PNASPISFYT PPCVKGSGLC NRSPESILKM AAKTFPNTPS ILRKRKNTSQ GHLPPNKIGL 480 VDCESVREVL NVSDEQERHK NSAEMSGSQE ESLCESPTSQ GISTIGPNGK AFNASPPYRL 540 RARRTAVFKS VEKQLEFTCD KEYDDGSDLG HALYKGG

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MSSNSIPATS SQAEEEMEEV KLEECCLENK QSTAASSSSV SEGSGSAILK SPGVCSPAST  60
SPTHRRTSGP IRRAKGGWTP QEDETLRNAV AAFKGKSWKK IAEFFPDRSE VQCLHRWQKV  120
LNPDLVKGPW TQEEDDKIIE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH NHLNPDIKKD  180
AWTLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGKLPPA  240
AKNGSQNGAK ETSKSTATKR LLVCSTKGSD STAQTSSGNA DVCKLDEDGK DQFESSAPHQ  300
DLGASSSVLP NEPADSEGVE CQLRSSFRDL SCCNSESGSK FENFAVNSKP QIESIINSQA  360
ESENCGFNNL IDEDRVKRTP VPVETPGYGS LYYEPLLESC GPFDSGFSSM RCFQHDYSSS  420
PNASPISFYT PPCVKGSGLC NRSPESILKM AAKTFPNTPS ILRKRKNTSQ GHLPPNKIGL  480
VDCESVREVL NVSDEQERHK NSAEMSGSQE ESLCESPTSQ GISTIGPNGK AFNASPPYRL  540
RARRTAVFKS VEKQLEFTCD KEYDDGSDLG HALYKGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-163	MYB family protein