PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1287210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19950 Da    PI: 6.7456
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1287210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.93.9e-111557950
                       HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
             SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                       r vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++
  Pd.00g1287210.m01 15 RRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 57
                       89**********************9998777751567888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MSKESALSFM IGNARRVTFK KRKASLFRKL TEITTLCGII ACAVVYDPSD SKMDAWPSPQ  60
EAFYVLENFK KLPEQRRGQF MMDQKAFLKK NISRLNGQLE RARFKNQALD AELLLIEYLE  120
GKNLSDSSRL GSLLALEDQL AKKISFITNR IEFMEVVEPN EVDAEINSDE MGDQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.29e-23M-type_MADS family protein