PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1280190.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

RAV

Protein Properties

Length: 423aa MW: 45912.2 Da PI: 9.2077

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1280190.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.2	9.7e-14	81	129	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Pd.00g1280190.m01 81 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 129 89**9888.8*****3.....5******99***********98 PP
2	B3	96.2	2.1e-30	219	332	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+ tpsdv+k++rlv+pk++ae+h gg+ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L Pd.00g1280190.m01 219 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtttstsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL 310 89**************************999998888888876676799************************************* PP -TT-EEEEEE-SSSEE..EEEE CS B3 75 kegDfvvFkldgrsefelvvkv 96 ++gD+v F+++ ++++l++ + Pd.00g1280190.m01 311 QAGDIVSFQRSTGQDKQLYIDW 332 *******8766777777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MDGISLSSTE ESTTSDSISI SPNNHLLPTT IAMSPIAKSS PHADSLCRLG SGASSVILDS 60 EISSGGVGGG IEAESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAAKAY 120 DVAAQRFRGR DAVTNFKPSP TGTGTDDDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE 180 QSKRNNYGFL DANGKRARAH GSLGPFGSDR VPKARDQLFE KAVTPSDVGK LNRLVIPKQH 240 AEKHFPLQSG NNFNNHTTTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG 300 WSRFVKEKNL QAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQPVQMVR 360 LFGVNIFKIP GSGGGAVVDA ATAAAAIGGG SCNNNINNVG KRMREMELLE LEFSKKPRII 420 GAL

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MDGISLSSTE ESTTSDSISI SPNNHLLPTT IAMSPIAKSS PHADSLCRLG SGASSVILDS  60
EISSGGVGGG IEAESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAAKAY  120
DVAAQRFRGR DAVTNFKPSP TGTGTDDDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE  180
QSKRNNYGFL DANGKRARAH GSLGPFGSDR VPKARDQLFE KAVTPSDVGK LNRLVIPKQH  240
AEKHFPLQSG NNFNNHTTTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG  300
WSRFVKEKNL QAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQPVQMVR  360
LFGVNIFKIP GSGGGAVVDA ATAAAAIGGG SCNNNINNVG KRMREMELLE LEFSKKPRII  420
GAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-127	RAV family protein