PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1273920.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 394aa MW: 42674.5 Da PI: 6.4275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1273920.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.8e-16	225	271	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Pd.00g1273920.m01 225 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 271 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MHEDEMASWL QYPLVDDPFC ADLLYPDSST VHQTNTAAAA AELRPNPISA PPIHPPRRTE 60 LQNFLHFSRT NNNKDRVSEA APSSSKSVVR ESTTVVDSCD TPLVGHSSRA LDSGLDGGGG 120 VTAGAATSFV TVATANAATS FPGKEVMTCE MSLTSSPGGS SASASASAEP ISSQKPRADE 180 DRKRKGREAE DDGEFQSEDV EFESANGKKK ARGSTSTKRS RAAEVHNLSE RRRRDRINEK 240 MKALQELIPR CNKSDKASML DEAIEYLKSL QLQVQMMSMG CGMVPMMFPA GSSMPTVAAH 300 LGPRFPVPPF HMQPIPANDP ARVQATNQSD QMLNALAAQN PNQSRMPNFA DPYQQFFNPQ 360 QMQLPLQQNQ AMAQPSSKPS SSKGPETQEN HQSG

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MHEDEMASWL QYPLVDDPFC ADLLYPDSST VHQTNTAAAA AELRPNPISA PPIHPPRRTE  60
LQNFLHFSRT NNNKDRVSEA APSSSKSVVR ESTTVVDSCD TPLVGHSSRA LDSGLDGGGG  120
VTAGAATSFV TVATANAATS FPGKEVMTCE MSLTSSPGGS SASASASAEP ISSQKPRADE  180
DRKRKGREAE DDGEFQSEDV EFESANGKKK ARGSTSTKRS RAAEVHNLSE RRRRDRINEK  240
MKALQELIPR CNKSDKASML DEAIEYLKSL QLQVQMMSMG CGMVPMMFPA GSSMPTVAAH  300
LGPRFPVPPF HMQPIPANDP ARVQATNQSD QMLNALAAQN PNQSRMPNFA DPYQQFFNPQ  360
QMQLPLQQNQ AMAQPSSKPS SSKGPETQEN HQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	210	RKRKGREAEDDGEFQSEDVEFESANGKKK
2	230	235	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	6e-52	bHLH family protein