PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1271140.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 819aa MW: 91103.7 Da PI: 5.6336

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1271140.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	366	389	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+++ +H+ + H Pd.00g1271140.m01 366 FECHKCSMTFGEKDSYLQHLLSfH 389 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MNNRCCVSRL WNHLRRKINL MTVFITRPSR QIMKDLVVPK IDRSVFNESA GSRRQTYSRP 60 RRSQSDASTG HRRRVAGLHA TPKLSPVPPD DPERNENHAI IAHLKNFISQ DPKFDQINFE 120 ATHTASFPML LGPNHELRSG IVGFEGREDE GVKKRKRGRK PKVKVLSMEG EGYVGMEMVN 180 KNGAAVDVSG LANVEDPFGE ELRRRTVGLE TEEQLLGFMR ELGGQWGSRR KKRKIVDANE 240 FGDALPVGWK LLLGLKRKEG RAWIYCRRFI SPTGQQFLSC KEVSSFLHSF FGFNNARQPD 300 GRGGENLQEE CIMTTENQHS DKDGGRRQSV NSSSALVVST ISNEREKEVS LSGMENLAEV 360 QIRDLFECHK CSMTFGEKDS YLQHLLSFHQ RTTRRYRLGS TVGDGVIIKD GKYECQFCHK 420 VFLERRRYNG HVGIHVRNYV RRVEESPGPT TVQKRIESPS GEGFPSRISK MDALIEIAQN 480 SILETSTAGP NNESKCGPAA NSHQEMNIDS PLSEPDLEGS MIDRTASDQH DSEHTITDGS 540 MEEADDPMEV VDVKMDSGMN TTSIEKNGKP SESSLEKDGL VFTSDELEKS GTNQDGASQC 600 LIHASSNDKI ISEVVGNENL NFTSTLEHPN AVELSNNKNS EPAVEFGSSN DHGPANDTLI 660 EPVRQANEEN EIQSGISDSS MSLVQPLVCF PTSNAISDKG EQHVSSVGQR NNHETGFEEL 720 RLDEIEPLKY GFAGGQESLT MQEVPMDLTN NAEMERAFGS SVQFEQEEVM LSMAASHQLT 780 CVWCGVEFNH EAADSEIQAD SVGFMCPACK AKISGPLNV

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MNNRCCVSRL WNHLRRKINL MTVFITRPSR QIMKDLVVPK IDRSVFNESA GSRRQTYSRP  60
RRSQSDASTG HRRRVAGLHA TPKLSPVPPD DPERNENHAI IAHLKNFISQ DPKFDQINFE  120
ATHTASFPML LGPNHELRSG IVGFEGREDE GVKKRKRGRK PKVKVLSMEG EGYVGMEMVN  180
KNGAAVDVSG LANVEDPFGE ELRRRTVGLE TEEQLLGFMR ELGGQWGSRR KKRKIVDANE  240
FGDALPVGWK LLLGLKRKEG RAWIYCRRFI SPTGQQFLSC KEVSSFLHSF FGFNNARQPD  300
GRGGENLQEE CIMTTENQHS DKDGGRRQSV NSSSALVVST ISNEREKEVS LSGMENLAEV  360
QIRDLFECHK CSMTFGEKDS YLQHLLSFHQ RTTRRYRLGS TVGDGVIIKD GKYECQFCHK  420
VFLERRRYNG HVGIHVRNYV RRVEESPGPT TVQKRIESPS GEGFPSRISK MDALIEIAQN  480
SILETSTAGP NNESKCGPAA NSHQEMNIDS PLSEPDLEGS MIDRTASDQH DSEHTITDGS  540
MEEADDPMEV VDVKMDSGMN TTSIEKNGKP SESSLEKDGL VFTSDELEKS GTNQDGASQC  600
LIHASSNDKI ISEVVGNENL NFTSTLEHPN AVELSNNKNS EPAVEFGSSN DHGPANDTLI  660
EPVRQANEEN EIQSGISDSS MSLVQPLVCF PTSNAISDKG EQHVSSVGQR NNHETGFEEL  720
RLDEIEPLKY GFAGGQESLT MQEVPMDLTN NAEMERAFGS SVQFEQEEVM LSMAASHQLT  780
CVWCGVEFNH EAADSEIQAD SVGFMCPACK AKISGPLNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	258	RRKKRKIVDANEFGDALPVGWKLLLGLKRK
2	230	259	RRKKRKIVDANEFGDALPVGWKLLLGLKRK
3	231	260	RRKKRKIVDANEFGDALPVGWKLLLGLKRK