PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1257350.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 824aa    MW: 90395.3 Da    PI: 6.1157
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1257350.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37.3e-24132233199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Pd.00g1257350.m01 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 219
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  Pd.00g1257350.m01 220 WNEKNQLLLGIRRA 233
                        8899999****997 PP
2Auxin_resp118.84.4e-39258341183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  Pd.00g1257350.m01 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWTNSHWRSVK 341
                        79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    
MRLSSSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWTNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGIPSFH GLKDGDMGIN APLMWLQGGV GDQGIQSLNF  420
QGFGVTPWMQ PRLDASMAGL QPERQVLPQS QSQNTYLQSF QENQAPAQAQ QIPNVMSALS  480
NFASATQSQS ASLQAIPSQP QQQSFPDPVG NPISSSDVPP IHSILGSLSQ DGASHLLNLS  540
GSNSVISSSL LPKQIAGEQQ LSSGAAQCVL PQVEQLGTPQ SNISELTALP PFPGREYSAF  600
QGGTDPQSNL LFGVNIDSSS LMLHNGIPTL RNIGNGNDSL SMPFGASSYT SATGNDFPLN  660
SDMTTSSCVD ESGFLQSSEN VDQVNPTRNF VKVHKSGSFG RSLDISKFSS YDELRSELAR  720
MFGLEGQLED PQRSGWQLVF VDRENDVLLL GDDPWQEFVN NVWYIKILSP LEVQQMGKEG  780
PNRAASVPSN KLSNGGNNTC DDYVSRQDLR NSTNGIASLG SLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein