PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1253880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 776aa    MW: 85416.5 Da    PI: 6.0602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1253880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-2091146156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Pd.00g1253880.m01  91 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 146
                        688999***********************************************999 PP
2START216.21.2e-672815021206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        e+a +a++el+++a+ +ep+W++s     +  n+de++++f++        ++ ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a
  Pd.00g1253880.m01 281 EIAVAAMEELIRMAQMGEPLWMTSLdgntTVFNEDEYIRTFPRVAPkpsnhFKCEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRA 371
                        57899********************88777789********99777999999**************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +tlev+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d  +++p       ++++pSg+li++++ng+skv
  Pd.00g1253880.m01 372 MTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHIDGTWAVVDVSLDTLRPNPA---PRSCQRRPSGCLIQEMPNGYSKV 460
                        *****************************************************************4...455789***************** PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        twvehvd+++r +h+l+++lv+sg a+gak+wvatl+rqce+
  Pd.00g1253880.m01 461 TWVEHVDVDERGVHNLYKQLVNSGNAFGAKRWVATLDRQCER 502
                        ****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    
MPAGLMIPAR NMPSMIGSNG NISGFGSSSG LTLGQPNLME AGHLHPLDMA PNTSESDIVR  60
IREDDFDSAT KSGSDNPEGG SGDDQDPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR  120
KELSRELGLE PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGSASC  180
PNCGGPTAIG EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPVGNYPL LSSPVPSRSP  240
LDLGVGSFGG QQGMAGEMYG GGDLLRSISG PNEADKPLII EIAVAAMEEL IRMAQMGEPL  300
WMTSLDGNTT VFNEDEYIRT FPRVAPKPSN HFKCEASRES AVVIMNHINL VEILMDVNQW  360
STVFSGIVSR AMTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHIDG  420
TWAVVDVSLD TLRPNPAPRS CQRRPSGCLI QEMPNGYSKV TWVEHVDVDE RGVHNLYKQL  480
VNSGNAFGAK RWVATLDRQC ERLASALASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC  540
AGVSASTTHT WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL  600
RDENSRNEWD ILSNGGIVQE MAHIANGRDT GNCVSLLRSA NSSQSNMLIL QESCTDQTAS  660
FVIYAPVDIV AMNVVLNGSD PDYVALLPSG FAILPDGGGM GDSGSGGSLL TVAFQILVDS  720
VPTAKLSLGS VATLIFSVLW WRKEGERRET QTQMLVRDLG LYTRRERSQE RTLHDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0HD-ZIP family protein