PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1253760.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 473aa    MW: 53221.1 Da    PI: 7.6897
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1253760.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-06731127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC  ++r G C   ++C+FaHg+
  Pd.00g1253760.m02  7 FKTKLCVLYQR-GRCAL-ESCSFAHGQ 31
                       69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ALESCSFAHG QAELRRFSGS FDGDGNANSP LSNASLIYEG  60
FNITVHYYVT HVIPCNGRRD SGGDDLRDKL ERRYSPRRRY SPERDARGRH VLRAEYSPSR  120
SLERENFEYS FGNSKRRKKQ HLDGQSDISG SLRISNETEH EAKEANSRGV LEEQLKQLQS  180
EINMLDHRRS QLGVDLEEKS QEADSLTSKI KELEAQLYKE KEDCKRISSK VKKFVKAHSR  240
NSRIQDQLKR SQVRLNKLGD QLALDIYGND VNEEDSSINI VSDGDGETTG FPVTPHNERL  300
NDASPSNIRL EAIRDYAKES KQSAHSTRGH LTTSSRPKKL SRWNIHPAQS NFDKKNEAVS  360
NAIGSPKQLA NEGKHDRRKT ASSSILSADM LKISESAPVV PSTSMAAHPV DTEVEIEPEY  420
KIEMVGKASG KIEEGAAYEN VSFSLPLPPP PIPKNNYSQY EGDDEIIDVQ GAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-32C3H family protein