PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1253680.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 428aa MW: 46910.5 Da PI: 6.3785

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1253680.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	46	90	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htv 39 C++++ +++ C d + lC++C ++ H++ H++ Pd.00g1253680.m01 46 LLCDKCNAQPAMVRCMDEKLSLCQSCDQWNHNNgdtttgmggHRT 90 57*****************************88877777777665 PP
2	CCT	63.4	7.1e-22	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ Pd.00g1253680.m01 372 RDKAKMRYKEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 415 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEPLCEFCGV VRAVVYCKSD LARLCLHCDG CVHSANILSR RHPRSLLCDK CNAQPAMVRC 60 MDEKLSLCQS CDQWNHNNGD TTTGMGGHRT HALTCYTGCP SLSEFSRIWS SVLDGSSSSA 120 QVPINDQTNC IGNALERRDN SERSFGVVTS KLSGSLDQSS CAKFEPWMAR STLISANPNG 180 IPQGNKDQAP FLPQESSLSK GCTNFKDLAI QDSNDLCDGL NIDDVPLNFE NAEGIFSCPQ 240 GPSRYQFEDG EMDCLLMEKN LSVTESNGPN DNAVQASSSG PQDCVAFQSS CGSDNVMPAM 300 NGSANCLLMN PNCSRNINLG FPTGQVHSSM SLSLSSMSRE SNPDYQDCGL SPIFLTGEPW 360 DSAMEASSPQ ARDKAKMRYK EKKKTRTFGK QIRYASRKAR ADTRKRVKGR FVKAGEEYDY 420 DPLVTRNF

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEPLCEFCGV VRAVVYCKSD LARLCLHCDG CVHSANILSR RHPRSLLCDK CNAQPAMVRC  60
MDEKLSLCQS CDQWNHNNGD TTTGMGGHRT HALTCYTGCP SLSEFSRIWS SVLDGSSSSA  120
QVPINDQTNC IGNALERRDN SERSFGVVTS KLSGSLDQSS CAKFEPWMAR STLISANPNG  180
IPQGNKDQAP FLPQESSLSK GCTNFKDLAI QDSNDLCDGL NIDDVPLNFE NAEGIFSCPQ  240
GPSRYQFEDG EMDCLLMEKN LSVTESNGPN DNAVQASSSG PQDCVAFQSS CGSDNVMPAM  300
NGSANCLLMN PNCSRNINLG FPTGQVHSSM SLSLSSMSRE SNPDYQDCGL SPIFLTGEPW  360
DSAMEASSPQ ARDKAKMRYK EKKKTRTFGK QIRYASRKAR ADTRKRVKGR FVKAGEEYDY  420
DPLVTRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	5e-88	CO-like family protein