PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1248580.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 271aa    MW: 30627.4 Da    PI: 6.6257
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1248580.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.43.9e-3269150373
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec 73 
                         k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl qa p+ik+l+g+         s+s+a  ++c
  Pd.00g1248580.m01  69 CKRDRHSKINTARGLRDRRMRLSLEVARKFFWLQDALHFDKASKTVEWLLIQATPEIKKLVGDckhmmsstkSTSPAtsESC 150
                        69*************************************************************8777665442222221222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MPLHDSQQAP PLTTMREAVA ANNTLADDHR QTTTTSATLN IKMVDWDSNK NHGEMMNMDQ  60
PQIPRRRSCK RDRHSKINTA RGLRDRRMRL SLEVARKFFW LQDALHFDKA SKTVEWLLIQ  120
ATPEIKKLVG DCKHMMSSTK STSPATSESC EVISGIDEAA TNTNIHINID GGNDGDDKLI  180
QSCEIQPSAK ERKGLVHHEI EEPMSSCQVG DHPDLVVDHG TTHDPLVIMG KWSPPSIFSS  240
LQQNIGISQE HHQFADFQFF GKPWEVYNNY S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-24TCP family protein