PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1248190.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 469aa MW: 52087.9 Da PI: 4.6904 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.3 | 1.6e-08 | 6 | 51 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + k++++fC ++ +lC+ C + H+ H++v+l Pd.00g1248190.m01 6 ARACDSCLIKRARWFCAADDAFLCQRCDGSVHSAnqlasrHERVKL 51 678*****************************66889999998875 PP | |||||||
2 | CCT | 68 | 2.5e-23 | 400 | 443 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Pd.00g1248190.m01 400 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 443 9*****************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence |
MGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK LQAASSKPNQ 60 STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VSLNPPLPFV PEIGCEEANY 120 MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AIDLDDEVTE MGRGNHHEVG 180 DDEEENNNNN SGGNELDNLP GFLPSDMELA EFAADVENLI GGGLDDEDSG DIKGVLGLLD 240 DSKLEGDGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL RLSSSPLPMG 300 GEEEKVVFLM GVQSSDEVAL MDNKQMMMKR KICLRLDYEA IITAWANQGS PWTTGTRPEL 360 NPDDGWLDCM GMWGSDQIHQ PHGHGESAGC VGGRGDDRGR EARVSRYREK RRTRLFSKKI 420 RYEVRKLNAE KRPRMKGRFV KRTSGSNFVG SSSSNSKTAA GAFPYLIHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 411 | 427 | RRTRLFSKKIRYEVRKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 4e-76 | CO-like family protein |