PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1247430.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 1001aa    MW: 113720 Da    PI: 8.89
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1247430.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10386430246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++WT+ Ed+ l+++v++ G ++W  Ia  +g++Rt+ qc  r+q 
  Pd.00g1247430.m01 386 KSWTAKEDKNLLHLVQEKGIDNWFNIAVLLGTNRTPFQCLARYQR 430
                        58*****************************************96 PP
2Myb_DNA-binding41.72.7e-13439482246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          WT++Ed +l  av+ lG g+W ++a+ +  gRt+ qc +rw k
  Pd.00g1247430.m01 439 REWTKDEDARLRLAVEALGEGDWQSVASALE-GRTGSQCSNRWKK 482
                        68*****************************.***********98 PP
3Myb_DNA-binding44.82.9e-14492535246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        grWT+eEd++l+ a  ++G+++W++ a+ ++ gRt  qc++r+ +
  Pd.00g1247430.m01 492 GRWTPEEDKRLKVAQMLFGPKNWNKTAQFVP-GRTQAQCRDRYVN 535
                        8******************************.***********77 PP
4Myb_DNA-binding44.92.6e-14544587247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        g WT+eEd +l +a++++G   W+++a++++ +Rt+++c  rw  +
  Pd.00g1247430.m01 544 GEWTEEEDSRLREAIAEYGYC-WSKVAACVP-RRTDNMCWRRWKVL 587
                        68*****************99.*********.***********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1001 aa     Download sequence    
MEAIRRSCML TGTNPDDLNP NNNNQGGGDL RHSSGSESES DSDEVDDDIE LLRKIRSRFS  60
NISDFCEPLS LKPLSSLPPA VSDDEEDDYQ TLLSVQKRFA AYQNDTCKPV KETCNEIAHE  120
SSQGTEDACM AIHPLSDNAE GQPSASIELQ QSDSCRPSTL PAKYSTFPKS AQVFMDAIKK  180
NRSSQKFLRS KLVQIEAKIE ENRKLKERVK ILKDFQVSCK KRTGEALSQK KDPRVQLILV  240
NRPRKFRDLK AHDKKISAMF YAPEENSHVA NYRMTLTKFL HSLDRKKWSK AEKKALEKGI  300
RQQFQEMVLQ FSVHESSCSE RPYGDSNHID DILASIKDLE ITPEKIREFL PKVNWEQLAS  360
MYIVGRSGGE CEARWLNWED PLINHKSWTA KEDKNLLHLV QEKGIDNWFN IAVLLGTNRT  420
PFQCLARYQR SLNASILKRE WTKDEDARLR LAVEALGEGD WQSVASALEG RTGSQCSNRW  480
KKSLHPTRKR EGRWTPEEDK RLKVAQMLFG PKNWNKTAQF VPGRTQAQCR DRYVNSLEPS  540
LKWGEWTEEE DSRLREAIAE YGYCWSKVAA CVPRRTDNMC WRRWKVLFPD EVSLLKEEKR  600
IRKVALMCNF VDRETERPAL GPNDFRPPIV TSTKTLTYSR KQKGKLSKVS KKIRSRRQRN  660
NSQSCSKVSE IDNFDKVETC EGHDASNTKN KVRKQRRIRH KGTEPTGECQ VVVTLPCEQD  720
THKEPREMSC SDQIVGTSDG DDTTLACFLR NKSKKRKLGP VPSINGKKKR KLVASDSAVQ  780
ECPANSIQKG CEVHPEMDEV CDGNQIVSFR KDDEFVVHCD ERISDRMPPC SVQSSHLNGN  840
IMASDNEPDG LKLVSGWKAG LQEPVRKVVG IDPESDGDTD DFVLASLRKK KLKKRHPQNA  900
KSGPHACPPS GVTTRSEPLP KRVDQSNDRS QVPFVAVGNE PGAVDIGKQH GVDHRETVKE  960
IVNIGAEGDH EAGDTTLACF LRNKSNNRQR QSRRGDNQKP R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1749757LRNKSKKRK
2754771KKRKLGPVPSINGKKKRK
3755772KKRKLGPVPSINGKKKRK
4767772KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0MYB family protein