PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1244530.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 397aa MW: 45430.5 Da PI: 8.808 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 154 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H Pd.00g1244530.m01 154 YICGVCGRKCKSNLDLKKHFKQlH 177 89*****************98766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence |
MNLLCNPIHT FPYKPFPLIS LHSSRSPFFN SKRSFQLQPI TTLSIRTRSY VAIKAAANSE 60 IDMVQNNQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQRFGEV VESSAYANRH 120 AFDHLPQWVI EQRRERKQLD ILERKGLVVP SEPYICGVCG RKCKSNLDLK KHFKQLHERE 180 RQKKLNRMRS LKGKKRQRFK ERFVSGNHKY NEAARSLIKP KVGYGLASEL RRAGVFVKTV 240 EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR KAREANLGTV VVGDFDRALG 300 RHADVWVPWV GVENGEVSEK DLVPKRRRIF DGGSELDNVV DELVVTRSLS SGMRISAFSE 360 GELEEGDWVE DDGDSADSED YLLDSEDEGT DEEDGFF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 174 | RRERKQLDILERKGLVVPSEPYICGVCGRKCKSNLDLKKHFK |
2 | 325 | 329 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-178 | C2H2 family protein |