PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1233000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HB-other
Protein Properties Length: 242aa    MW: 27249.8 Da    PI: 11.2165
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1233000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.4e-09176223653
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
           Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                        +++k  +e+Le++++k++ p+ +++  + + ++L+ ++V  WF  +R 
  Pd.00g1233000.m01 176 RLKKAHVETLESVYRKTKRPTNAMISSIVHVTNLPRKRVVKWFEDKRS 223
                        5778899*************************************9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MAFASALNTP KGLHCLMLPS SRNERPPTNL ILPRQFPARF SSTLALARRR NQRTEVASSK  60
PKINKLKTWQ LRRLAAALKV GRRKTSIKIL AAELCLDRPV VLELLRNPPP SLLMMCAALP  120
DEPAPTISVS QTMPIETVVE TTVETVVETT TESSEVETTV NKPIHVMQQK FSAQKRLKKA  180
HVETLESVYR KTKRPTNAMI SSIVHVTNLP RKRVVKWFED KRSEDGVTDS RLPYRRPAPN  240
TA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-65HB-other family protein