PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1230540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 614aa MW: 67549.1 Da PI: 5.7235

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1230540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.3e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ + ++++ l+C+ ++ lC C ++ H+ H Pd.00g1230540.m01 12 VPCDFCTDQPAVLYCKADSAKLCLFCDQHVHSAnllsrkH 51 57***************************99555555556 PP
2	zf-B_box	21.9	3.5e-07	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ +++++ C +++ lC++C H + H+++pl Pd.00g1230540.m01 54 SQICDNCASEPVSVRCSTDNLVLCHECDWDAHGScsvsaaHDRTPL 99 689*************************999954888888888775 PP
3	CCT	64.3	3.5e-22	406	449	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ Pd.00g1230540.m01 406 RGNAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 449 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MASPKSRSGE GVPCDFCTDQ PAVLYCKADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC 60 ASEPVSVRCS TDNLVLCHEC DWDAHGSCSV SAAHDRTPLD GFSGCPSALQ LASLLGLDLH 120 DKNVPGRPDP QLQNWDMGMP SLDSSWSGMG LQDLMVPNHN QNGVVYPNDE LMLKRQSGGG 180 ISGKQKQGIQ KQLEDNGNEN VEGLEPLDLG NRNGGVDGVV VSAATSQPLL QQQAPFTSLL 240 MMPEENRGIV DGDMLWNSNP HGQSSQIWDF HLGRSRDHEE SGPLEVTYGS NDSGFMIKNF 300 GELMKETSLT DTKMFRDMYQ MNCPVGHDDI KFNNNSNNPA PSQGPATSES NNIPVGRPSL 360 GSAFGEDKGS GASTDLNFME QSFLMRGDSL RTVGTKADME LLAQNRGNAM LRYKEKKKTR 420 RYDKHIRYES RKARADTRKR VKGRFVKATE APDELIDFFF CVMGCRVLLG FLLAAAAVIA 480 SVDCNSEGDI LNAWKTQLTD PNNVLQSWDP TLINPCTWFH VTCNSENSVT RLDLGNANLS 540 GPLIPELGNL TNLQYLEVFS NRLRVFSNSL IGHIPPNFGN LTSLEILELN SNRLTGPLPF 600 VVLELVRFGQ LKHL

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MASPKSRSGE GVPCDFCTDQ PAVLYCKADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
ASEPVSVRCS TDNLVLCHEC DWDAHGSCSV SAAHDRTPLD GFSGCPSALQ LASLLGLDLH  120
DKNVPGRPDP QLQNWDMGMP SLDSSWSGMG LQDLMVPNHN QNGVVYPNDE LMLKRQSGGG  180
ISGKQKQGIQ KQLEDNGNEN VEGLEPLDLG NRNGGVDGVV VSAATSQPLL QQQAPFTSLL  240
MMPEENRGIV DGDMLWNSNP HGQSSQIWDF HLGRSRDHEE SGPLEVTYGS NDSGFMIKNF  300
GELMKETSLT DTKMFRDMYQ MNCPVGHDDI KFNNNSNNPA PSQGPATSES NNIPVGRPSL  360
GSAFGEDKGS GASTDLNFME QSFLMRGDSL RTVGTKADME LLAQNRGNAM LRYKEKKKTR  420
RYDKHIRYES RKARADTRKR VKGRFVKATE APDELIDFFF CVMGCRVLLG FLLAAAAVIA  480
SVDCNSEGDI LNAWKTQLTD PNNVLQSWDP TLINPCTWFH VTCNSENSVT RLDLGNANLS  540
GPLIPELGNL TNLQYLEVFS NRLRVFSNSL IGHIPPNFGN LTSLEILELN SNRLTGPLPF  600
VVLELVRFGQ LKHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	8e-99	CO-like family protein