PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1227030.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 415aa MW: 46618.3 Da PI: 7.7984

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1227030.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.8e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde l++ ++ +G g+W++I++ g+ R++k+c++rw +yl Pd.00g1227030.m01 13 RGLWSPEEDEMLINHINTYGHGSWSSIPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	50.2	6.1e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ Pd.00g1227030.m01 66 RGSFSEQEERTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 899*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MGHKCCSKQK VKRGLWSPEE DEMLINHINT YGHGSWSSIP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFS EQEERTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLPS SKTNHSTNNN ISECSFYPTL PKPSYFFPVN SHVSDTSIDI LKAHFQALSS 180 ISSSPDTNHI NPDHSLHGSS NLSSVHEYRN HNTVWTLQEK LNSNAFMEAM NQPSVGASVP 240 TSSCHSYPLS ELEIVNENCK WGTGNFEPTK PDQEMFMQPQ EENACEVGIE KANMLIDEPT 300 NMDVSFGSSN SDFDFVESTQ LPYGLYNYHL SPMMDQLQWN DPTHLDLGGP KPTIRGRSPT 360 LSAKKPRLDR RPKTYCNAAL RFSGQSGLNV HLSASATSAL GTNWQVMAGT RDRFA

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MGHKCCSKQK VKRGLWSPEE DEMLINHINT YGHGSWSSIP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS EQEERTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLPS SKTNHSTNNN ISECSFYPTL PKPSYFFPVN SHVSDTSIDI LKAHFQALSS  180
ISSSPDTNHI NPDHSLHGSS NLSSVHEYRN HNTVWTLQEK LNSNAFMEAM NQPSVGASVP  240
TSSCHSYPLS ELEIVNENCK WGTGNFEPTK PDQEMFMQPQ EENACEVGIE KANMLIDEPT  300
NMDVSFGSSN SDFDFVESTQ LPYGLYNYHL SPMMDQLQWN DPTHLDLGGP KPTIRGRSPT  360
LSAKKPRLDR RPKTYCNAAL RFSGQSGLNV HLSASATSAL GTNWQVMAGT RDRFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	364	373	KKPRLDRRPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	3e-82	MYB family protein