PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1226560.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 490aa    MW: 53173.4 Da    PI: 8.0443
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1226560.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.5e-10133157226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C +++ t tCk+G+ CkF H+
  Pd.00g1226560.m02 133 GEKDCAHYMLTRTCKFGELCKFDHP 157
                        7889********************8 PP
2zf-CCCH28.42.9e-09184210127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++f +t  Ck+G rCkF+H++
  Pd.00g1226560.m02 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210
                        5789*********************96 PP
3zf-CCCH37.73.5e-12233257327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C f+++tG+Ck+G++CkF+H++
  Pd.00g1226560.m02 233 EPPCAFYLKTGQCKFGATCKFHHPK 257
                        79*********************96 PP
4zf-CCCH38.52e-12309334126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C+f+++tG CkyG++C+++H+
  Pd.00g1226560.m02 309 PGEPDCPFYLKTGSCKYGATCRYNHP 334
                        5789*********************9 PP
5zf-CCCH37.44.4e-12397418526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++++tG+C++G++Ck++H+
  Pd.00g1226560.m02 397 ECDYYMKTGECRFGEQCKYHHP 418
                        7********************8 PP
6zf-CCCH40.35.3e-13449474227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        + ++C ++++tGtCkyG++CkF H+p
  Pd.00g1226560.m02 449 GVAICVYYLKTGTCKYGATCKFDHPP 474
                        5789********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM  60
YLATSHFMSQ SSWPAPDVEP SVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL  180
PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL  240
KTGQCKFGAT CKFHHPKDIQ IQIPSAEQEN KIGETGTTIQ PEGTGFAVKL PVSFSPALLY  300
NSKELPVRPG EPDCPFYLKT GSCKYGATCR YNHPDRYDFC AAINPPIGAI SHSIVAPPAA  360
GLNIGVINPA ASIYQTLAQP TVGGGQTVYP QRVGQIECDY YMKTGECRFG EQCKYHHPID  420
RSAVALSTTK PVQQQNVKLT LAGLPRREGV AICVYYLKTG TCKYGATCKF DHPPPGEVMG  480
MAASQGASGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein