PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1223180.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 211aa MW: 23084.9 Da PI: 8.0403 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.2e-07 | 8 | 32 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g1223180.m01 8 GEKDCPCYMRTLSCTYGMKCRFNHP 32 7789********************9 PP | |||||||
2 | zf-CCCH | 22.1 | 2.6e-07 | 139 | 165 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g1223180.m01 139 PGQPVCLYFSRAGDCKHKSNCKYHHPK 165 57899********************96 PP | |||||||
3 | zf-CCCH | 24.2 | 5.8e-08 | 186 | 210 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++++G+C+ G CkF+H+ Pd.00g1223180.m01 186 GQNICARYSAYGICNSGLACKFNHP 210 6789********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MGLPIRPGEK DCPCYMRTLS CTYGMKCRFN HPDPTPAGES DPPSGNGNGG PASLQGASSA 60 TAARWYAPGS LNNAPLYEPI MIPPSQEFPS QNTEWNGYQA PERSMPAPPP YVMNHSVTET 120 NTYEQYPQQK QVQEFPERPG QPVCLYFSRA GDCKHKSNCK YHHPKNQTAV PTSCALSDKG 180 LPLRPGQNIC ARYSAYGICN SGLACKFNHP S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 5e-63 | C3H family protein |