PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1222460.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 539aa MW: 61243.7 Da PI: 9.0139

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1222460.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl Pd.00g1222460.m01 22 RGPWTLEEDTLLIQYIARHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 69 89********************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Pd.00g1222460.m01 75 RGNLSPEEQLLILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 118 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MSSNTKSLSS TSCSEDESEL RRGPWTLEED TLLIQYIARH GEGRWNLLAK RSGLRRTGKS 60 CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKWGNRWSKI AQYLPGRTDN EIKNYWRTRV 120 QKQARHLKVD TNSTEFQNII RCFWMPRLLQ KIGGESSFSS PMLIQNQMAL QPLDNVSQHL 180 TAATASPPQI PGQGALNMSG TIYNLDSIQK QNAESEFCTS SCILPSEPVD MPKMSQFPEC 240 PPSPFHAILN NDNAKGGFCV DNNGYDIEAF NLQGSVSAQG FAGNSAGDCY VAESNWLDSD 300 FSCGMWSMDE LWQRFLCTAE AILLHGFQSL EAEKRSESLI LWFSSRFVKM FTSRKKIHKD 360 NNAEPTEFEE SVAQAVIELE SNSDLKSDLK DLYINSAVQV DVSGNRKAVV IHVPYRLRKA 420 YRKIHVRLVR ELEKKFSGKD VILIATRRIL RPPKKGSAAQ RPRTRTLTAV HEAMLEDVVA 480 PAEIVGKRTR YRLDGSKIMK VFLDPKERNN TEYKLESFSA VYRKLSGKDV VFEYPITDA

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MSSNTKSLSS TSCSEDESEL RRGPWTLEED TLLIQYIARH GEGRWNLLAK RSGLRRTGKS  60
CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKWGNRWSKI AQYLPGRTDN EIKNYWRTRV  120
QKQARHLKVD TNSTEFQNII RCFWMPRLLQ KIGGESSFSS PMLIQNQMAL QPLDNVSQHL  180
TAATASPPQI PGQGALNMSG TIYNLDSIQK QNAESEFCTS SCILPSEPVD MPKMSQFPEC  240
PPSPFHAILN NDNAKGGFCV DNNGYDIEAF NLQGSVSAQG FAGNSAGDCY VAESNWLDSD  300
FSCGMWSMDE LWQRFLCTAE AILLHGFQSL EAEKRSESLI LWFSSRFVKM FTSRKKIHKD  360
NNAEPTEFEE SVAQAVIELE SNSDLKSDLK DLYINSAVQV DVSGNRKAVV IHVPYRLRKA  420
YRKIHVRLVR ELEKKFSGKD VILIATRRIL RPPKKGSAAQ RPRTRTLTAV HEAMLEDVVA  480
PAEIVGKRTR YRLDGSKIMK VFLDPKERNN TEYKLESFSA VYRKLSGKDV VFEYPITDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	3e-78	MYB family protein